Uncategorized

Superspreader Insurrection

     “The vaccine is the weapon that will end the war, but it won’t hit critical mass until June, September or even December. If we float along relying solely on the vaccine, the way many states are, we are looking at months of shutdowns and the economic, mental, and spiritual hardship they bring.…We can’t do that. We just can’t let that happen. We can’t float along, watching the pain, the hardship and the inequality grow around us. That’s not what we do in New York. We must take control of our destiny.” Gov. Andrew Cuomo, State of the State Address, January 12, 2021

     “If quick action isn’t taken, then the highly infectious B.1.1.7 variant of COVID-19 will become the main variant in the United States by March, further burdening our already overburdened health care system.” Frank Diamond, Infection Control Today, reporting on Centers for Disease Control warning, January 18, 2021

Dear Students,

My wife Ann and I got our first dose of the Pfizer vaccine on Friday, and while we’re not changing our precautions at all yet, it’s a huge relief to have gotten started. We’re both over 65, which puts us in priority Group 1A in Georgia, but there was a lovely personal touch as one of my former students who is in practice in Atlanta reached out to us and said her office had vaccine. She was sitting right where you are around 15 or 20 years ago. Slightly sore arms were the only side effect.

Since today is the holiday honoring the Rev. Dr. Martin Luther King, Jr.’s great legacy, it behooves us to remember that of the 400,000 Americans killed by the virus so far, a greatly disproportionate number are black. African Americans have also borne a disproportionate share of the economic devastation. I have written about this before, but I am emphasizing it again today. In 1963, two days before my 17th birthday, I was present in Washington for Dr. King’s “I Have a Dream” speech. We have come a long way since then, but we still have a long way to go.

Case in point: the insurrection that took place in the same city on January 6th was overwhelmingly white, and many among them were avowed white supremacists. Nobody thinks that if the rioters had been black they would have been allowed to get as far as they did in taking over our government.

Two days from now the same huge mall that I stood on with two hundred thousand others on that day in 1963 will be decidedly empty, despite the fact that President Biden will be inaugurated.

One reason it will be empty is the virus of course, which Biden has so much more knowledge of, and so much more appropriate caution about, than his predecessor. But the twenty thousand National Guard troops deployed to D.C. this week are not there to defend against the virus. They are there to defend against another right-wing insurrection.

The attempted coup on January 6th at the Capitol, designed to prevent the transfer of power to a duly elected new president, was also a superspreader event. Very few of the rioting revolutionists were wearing masks, and they certainly weren’t observing any kind of social distancing.

More surprising perhaps, some members of Congress who were hiding from them also did not wear masks, despite being crowded into rooms where they were sheltering from violence. Some of them mocked their colleagues and their official physician who were wearing and distributing masks. These members of Congress were Republicans.

Since the pandemic began, 62 members of Congress have contracted COVID-19, 44 Republicans and 18 Democrats. At least 7 have tested positive since the insurrection, most likely because of mask refusal by Republicans. Looking at the course of the American epidemic, blue states were affected first but controlled the spread better, and red states have had a much worse fall and winter surge, especially after controlling for rural and urban populations.

I try not to get too political in these updates, but these are the facts.

Some students have asked me what will be different after President Biden is inaugurated at noon on Wednesday. My answer is: a lot. First, we have to get there, and the possibility of further disruption by Trump supporters both before and after Wednesday is real.

But here is the good news:

  1. Biden has already appointed the most competent and experienced physicians and scientists to deal with the pandemic. There is a world of difference between them and the people they are replacing. This includes the heads of the CDC, FDA, HHS, the Coronavirus Task Force, and many other positions, starting with Dr. Anthony Fauci, who will finally have the ear of the president and the ability to speak directly to the American people.
  2. Biden has a detailed national plan for rectifying the dismal failure of the vaccine rollout, with an attainable goal of having 100 million doses delivered in the first 100 days of his presidency. Far from abandoning the states to their own floundering, he will work closely with the states and their governors to properly organize distribution and injection.
  3. Similar national plans for huge expansion of testing will be implemented, giving America its first detailed knowledge of who has and who is spreading COVID-19. Ditto (see #2 above) on working with the states.
  4. Public health education for preventive measures against the virus (masking, social distancing, etc.) at a national level will be hugely improved, along with increased mandates where possible, and the standards and models set by people in national government will be positive instead of negative.
  5. President Biden will invoke the Defense Production Act much more extensively than his predecessor, giving manufacturers well-compensated mandates to produce more vaccine, vials, syringes, freezers, protective personal equipment, and many other sorely needed products to fight the war we are in, as has happened in previous wars, but so far very inadequately in this great war against the pandemic.
  6. While the Senate is only narrowly controlled by Democrats, Biden, like Lyndon Johnson before him, is a ‘man of the Senate.’ He spent most of his life there, knows the institution and its ways, and is friends with many sitting senators. He may not get 100 percent of the funding he wants to fight the virus, but he will know how to compromise and he will get a lot.

The bad news is:

  1. Political opposition to all of the above will continue. That includes resistance to public health measures, vaccine refusal, and pretty much everything else the new administration wants to do. The same people who brought you 400,000 deaths will do all they can to bring you at least a couple of hundred thousand more. Continuing insurrection will make all this worse.
  2. New variants of the virus, especially the B.1.1.7 strain first identified in England, are spreading fast in the United States. This is partly because they spread at least 50 percent more efficiently, and partly because our precautionary measures have been so inadequate and the vaccine rollout such a failure. Continuing insurrection will make this worse too.
  3. 100 million doses of vaccine in the first 100 days (i.e. by the end of April) will get us nowhere near the herd immunity that all vaccination campaigns aim for. Even with the (probably) soon-to-be-approved one-dose vaccine from Johnson & Johnson added to our current options, we will still have protected only a fraction of Americans.
  4. And probably the worst news of all is that we could easily have a late spring and summer surge in the new variants, given the laxity of proper precautionary measures, and the slowness of even a greatly improved vaccine rollout. The dual graph comes from the new CDC paper on this. On the left is a reasonable model of what will happen with vaccination but without strict precautionary measures. On the right, a likely result of vaccination with masking, social distancing, and so on.

So, due entirely to our own failures, the overall pandemic will likely be with us through the summer and possibly into the fall of this new year and beyond. But it won’t be as bad as it is now, it just won’t yet be normal. Of course, we could change all that if we did the right thing.

Stay safe,

Dr. K

PS: Please don’t rely just on me. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York Times Coronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. I also recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning. For an antidote to my gloom, check out the updates of Dr. Lucy McBride, who doesn’t see different facts but accentuates the positive. For an up-to-date account of the clinical facts by the marvelous front-line doc Daniel Griffin, listen to TWiV episode 701, a marvelously clear step-by-step from exposure to recovery in 39 minutes.

 

 

 

Rolling Thunder

            “What we’re seeing is that this illness has no mercy, against any kind of gender, age, or race.” Joseph Varone, MD, Houston physician, June 30th.

            “The epidemic is out of control across the southern United States.” Peter Hotez, MD, Houston pediatric virologist and vaccine scientist, July 7th.

            CNN’s John Berman: “Do you see an end in sight, or a plateau?” Rebekah Jones: “Absolutely not, especially if schools are opening next month, then we’re on a third wave of this first wave of catastrophe.” Rebekah Jones is a former Florida State data scientist fired last month for refusing to manipulate COVID-19 statistics, speaking on July 8th.

Dear Students,

These quotes, which you can find on CNN videos, come from three different kinds of experts, and all of them are visibly upset about what they are seeing and saying. But the greatest anguish is in the face and voice of Dr. Varone, who has been interviewed many times since the above quote, in his hospital, on the front line of the spreading American epidemic. He is devastated. He goes to work every day to take care of people of all ages who are more and more numerous and more and more sick with a virus that could have by now been controlled.

I feel as if I am in a time warp. I am watching heroic doctors and nurses in Los Angeles, Phoenix, Tucson, Houston, El Paso, Miami, and other southern cities describe, on the verge of tears, the exact same overwhelming of hospitals that we saw two months ago in Queens, Brooklyn, and The Bronx.

Hardened medical professionals are begging—in mirror images of their April northern counterparts—for us to behave differently. They are telling us that they can’t handle any more coronavirus patients. They are running out of ICU beds, and if they had the beds, they would not have the professionals to staff them.

All the governors of these southern states had to do was watch how Andrew Cuomo of New York get that state’s epidemic under control, and do the same thing—except that they didn’t have to be taken by surprise and be a little late with it like he was. But instead of imitating him, heeding his warnings, and starting earlier, they denied they would ever have to face what he faced. Now they are facing it, and are headed for worse.

In the past few weeks I have likened the surging case numbers to lightning and have repeatedly said that I would wait to hear the thunder, namely the surge in hospitalizations. Leaders of our country and of many states told us we could ignore the case numbers because they were only the result of more testing. Never mind that the case numbers were rising much faster than the number of tests. Never mind that the proportion of tests coming out positive keeps going up and up and up.

We were also told that because the surging cases were at an average age that was younger we would never see a surge in hospitalizations.

But they already knew that younger people too could get very sick, and that younger people inevitably also infect older ones, so this was not wishful thinking, it was lying. Lies on top of lies. Lies, lies, and more lies.

In Miami-Dade County, since June 24th, hospitalizations have gone up 87%, ICU patients 91%, and patients on ventilators 108%. That is a doubling time of a little over two weeks, and it’s not just Miami. More than 50 Florida hospitals have reached their ICU bed capacity. The 7-day average of new daily hospitalizations in Florida meandered around 150 during April and May, declined into early June, hit an inflection point around 110 on June 7th, rose steadily, hit another inflection point around 170 a week ago. The average climbed more steeply from there, reaching around 270 on July 7th. There is no indication yet of the slightest  bending down of this curve.

In Texas, the count is reported differently, as the total number of people in the state in hospitals with COVID-19 on a given day. This number hovered under 2,000 in April and May, rose slowly but steadily in early June, then rose more steeply, increasing almost every day, to a total of more than 9,000 on July 7th. The Phase 1 opening in Texas began on May 1st, and proceeded despite rising cases, which were not supposed to produce rising hospitalizations—unless you believed the science, which said they were almost inevitable.

In Arizona, the number of COVID-19 patients in hospitals (click on the icon for “Hospital COVID-19-Specific Metrics” in the lower right then on the appropriate button across the top), the number on ventilators, and the number in ICU beds have all risen steadily and sharply since early June. According to The Arizona Republic, “85% of current inpatient beds and 91% of ICU beds were in use” as of Wednesday, July 8th. Native Americans are suffering most, extending the pattern of white people bringing them deadly diseases beginning with the arrival of Columbus.

California’s governor announced on Wednesday that hospitalizations for COVID-19 have increased 44% and ICU admissions by 34% in the past seven days. For Los Angeles County, the three-day moving average of patients hospitalized with the virus peaked at around 2,000 on April 29, declined to around 1,300 on June 15th, and rose twice as fast to return to around 2,000 yesterday. Available ICU beds are around all-time lows for the epidemic. “This is the explosion we warned about,” said a professor of public health at UC Irvine.

And in our own state of Georgia, where Emory will reopen partly live on August 19th, the seven-day moving average of the number of people hospitalized with COVID-19 declined steadily from 1,500 on May 15th, stayed under a thousand for most of June, then rose much more sharply than it fell, doubling to almost 2,000 today, with no end in sight. On Tuesday, Brian Kemp, Georgia’s governor, announced a marketing campaign to encourage Georgia businesses to be safe, including no mandatory anything.

Hospitalizations are rising in more than 20 states, so I could go on, but you get the idea. In every state, black and brown people suffer more than whites, and where there are Native Americans, they suffer most. All these states are trying to backtrack on aspects of their openings. (See the impact of early opening here.) They can still do something, but it better be big, and it better be now.

All the above graphs are what are known in statistics and business (among other fields) as hockey-stick curves. It’s what start-up companies dream of. You’re holding the hockey stick and your sales are flat for a while (the part of the hockey stick that you hit the puck with) and then there’s a long upward zoom that goes to the sky, or at least up to your chest. The upward zoom is straight and fast.

For sales, this is a great curve. For a disease outbreak, not so much.

Remember, we are now counting hospitalizations, the thunder. There is no argument that more testing leads to more hospitalizations; not even the world’s most empty hairdo could argue that. Only more disease leads to more hospitalizations, especially in a time when you’re hoping to stay out of the hospital and doctors are trying to keep you out. Also (a teensy reminder of good news from prior updates) remdesivir, dexamethasone, more sophisticated oxygen management, and maybe even a resurrected chloroquine are shortening hospital stays. Yet admissions stay ahead of discharges. Way ahead.

But what about deaths? Ah yes, the deniers are still holding that ace: declining or stable deaths. There are three reasons: 1. the above treatments have made the disease less deadly; 2. the average age of cases is going down steadily, and younger people are less likely to die of it, so far; and most importantly, 3. death is a lagging indicator—hospitalizations are doing the hockey-stick thing now, but we have to wait a few weeks before we know about deaths.

I would add that these upward-leaping hospitalizations also lag infections, by days to weeks. So whatever risks Americans took on the July 4th weekend are not yet reflected in these numbers. All that is ahead of us.

At the risk of straining the metaphor, we had the lightning (skyrocketing cases), we’re having the thunder (the hospitalization hockey stick), but we have not yet had the flash floods and drownings: a sudden surge in deaths on top of the 132,000 we have had already. We may not have it. But we have to do more than hope.

Sometimes when I watch an interview with a nurse or a doctor, and I remember those who risked or gave their lives to save us from our own stupidity, it’s hard for me to hold back tears. As the celebration of our independence passed, and it was not balanced with any wisdom about how to use that freedom, I was not proud of my country.

Look at New York (which opened in such a way that its cases dropped in half after the opening), or almost any other advanced country and you will see how it should have been done. Heck, look at Uruguay, Rwanda, or our sister state of Georgia (in Asia, capital Tbilisi) and you’ll see how we could have saved at least a hundred thousand Americans.

To any young person going through this I say: I was young once, and I loved it. You are losing part of it, and I am sorry for your loss. But I promise you: if you do the right thing now, it will almost certainly be behind you in a year. And you will live to brag for six decades about how you made it through that deadly pandemic of 2020.

But if you get it and have lingering lung damage, as some young people do, you may not have the breath to brag so loud. And if you bring it to your grandparents and kill them, you will shudder with shame whenever 2020 is mentioned.

Your choice. That freedom’s real.

Dr. K

 

 

 

 

 

16,000 George Floyds

“I can’t breathe.”

            Eric Garner, July 17, 2014, as he was being strangled to death by New York City police, for selling single cigarettes on a streetcorner in Staten Island

“I can’t breathe.”

            Elijah McClain, August 24, 2019, as he was being strangled by Aurora, Colorado police, for no reason, resulting in cardiac arrest in the ambulance and death days later

“I can’t breathe.”

            George Floyd, May 25, 2020, as he was strangled to death by Minneapolis, Minnesota police, for allegedly using a counterfeit $20 bill

“Once you get to the other side of it, you can breathe a little bit better… You think you’re gonna die during one of those episodes, I mean, you know you’re gonna die.”

            Kevin Harris, after recovering from the coronavirus infection that almost choked him to death

Dear Students,

These four men had two things in common: being African-American, and having someone or something strangling them. Kevin Harris did not die gasping for breath as the others did, and he was not strangled by police. But he was being strangled by racism.

I’ll come back to this and to the number 16,000, but first consider another number: 3,446. That’s the number of black people who were lynched in the United States between 1882 and 1968, accounting for 72.7 percent of the lynching victims in that time frame—when they made up around a tenth of the population.

We don’t have a record of what most of these 3,446 people said while they were dying, but most of them were murdered by being hanged by the neck until they were dead. They were not dropped to break their necks quickly as in a movie prison. They were usually “strung up” so that the group or mob could watch them struggle. Many were tortured and mutilated before and during the process. It was festive. Children were present. People took photos. They made postcards to send relatives and friends.

Some of the victims proclaimed their innocence before being hanged for crimes they did  not commit. Some spoke messages to loved ones. On March 9, 1892, three black men who had started the new People’s Grocery in Memphis, Tennessee were dragged out of their store by a white mob and lynched; it was simply too much of an affront to white rule for black people to have their own grocery store. One of them, Thomas Moss, said before he was murdered, “Tell my people to go west. There is no justice for them here.”

We don’t know what lynching victims may have said or tried to say while they were actually being strangled by the noose around their necks. They must have known there was no point in begging. But you can bet they were thinking: “I can’t breathe.”

A lynching is defined as a premeditated extrajudicial homicide by a group intending to punish someone or make an example of them. We don’t yet know whether the policemen who killed Eric Garner, Elijah McClain, and George Floyd intended to kill them, but we know that they showed utter disregard for these men’s humanity in their excessive, brutal, completely unnecessary, and ultimately fatal use of force—in each case in the face of victims and even bystanders begging them to stop.

I think it’s fair to say that they probably wanted to kill some black man some time, and this was their chance; otherwise, why would they have shown such disregard for black lives? The police were acting in a criminal manner toward each of these men; and ordinarily, when a homicide is committed in the course of another crime, it’s murder.

We also know that black people are killed by police at a rate between 2.5 and 3.5 times that of whites. We know that many white police officers, not just “a few bad apples,” are overtly or even proudly racist. And we know that the inadequate, even chaotic patterns of selection and training in police departments across the United States at best allow and at worst foster such racism.

This is all part of a pattern that anthropologists call structural violence: day to day destruction of human life by authorities as part of the normal course of things in, for example, colonialism, or the domination of one religious group over another. But if the victims of structural violence commit acts of violence themselves, even in protest or self-defense, only those acts are considered violent, not the day to day acts of the people in power oppressing them.

Today’s heedless murders of black people by white police extend the structural violence of lynchings, which in their day extended the structural violence of slavery, going back 401 years to 1619, when America first became a slave society. No one can doubt that centuries of whips and chains, hanging trees, and police brutality—all condoned or even depended on by the larger society and its day to day need for intimidation and control—deserve the name “structural violence.”

But what about Kevin Harris, who couldn’t breathe because of a new coronavirus?

Well, it turns out that structural violence—including American structural racism—requires a lot more than whips, chains, nooses, guns, and the knees and choke-holds of policemen. It requires a system that relentlessly maintains huge disparities, day by day and generation to generation, between white and black people—in wealth, education, job opportunities, income, education, incarceration, and perhaps most painfully, health and illness.

Are unprevented and uncared-for diabetes, heart disease, hypertension, asthma, AIDS, influenza, and now COVID-19 less violent to a human life than whips, nooses, and chokeholds? I don’t think so, and neither do the growing number of physicians and public health experts who see the structural violence of untreated, preventable disease as just as much or even more an extension of slavery than police brutality is.

On the day that Kevin Harris described his near-death from strangling by the coronavirus, there had been a total of 182 deaths in the whole United States, yet it was already clear that blacks were affected more than whites. As of this writing, more than 140,000 Americans have died of this virus.

But the number 16,000 is not the total number of African-Americans who have died, not by far. It is the number who have died but who would not have died if black people only had the same death rate as white people. In other words, it is the number of extra black people who were killed by the virus just because they were black.

Thankfully, Kevin Harris did not become one of those unfair, unnecessary, extra black deaths. But 16,000 others did. So far. And it’s not over yet. And proportionately more black people than white are being added to the numbers every day. So the excess of 16,000 is only the beginning.

What explains it? The basic deprivation of health is part of the long story of American structural racism and structural violence. Everything about underlying conditions that makes us more susceptible to COVID-19 is more common in black than white people. That includes, but is not limited to, diabetes, heart disease, hypertension, asthma, and a wide spectrum of acute and chronic non-COVID infectious diseases.

And every form of preventive and curative care is withheld from black people but given to whites. Our lack of universal health care is unique among the wealthy countries of the world. We stand out from the world in this exactly the way South Africa did before apartheid ended.

Take a look at the graph in the picture. The American anomaly is astounding. All other advanced countries have had declining maternal mortality for decades. Ours has been rising starkly, and experts agree that a large part of the reason is our gross and growing racial disparity. Infant mortality has declined slightly, but is much higher than in other developed countries, mainly because of how we neglect minorities. Black infant mortality is more than double that of whites. So the structural racism that began in 1619 begins again at the start of every black life.

Oliver Wendell Holmes, Sr., the great 19th century physician, wrote, “The woman about to become a mother should be the object of trembling care and sympathy wherever she bears her burden or stretches her aching limbs. God forbid that any member of the profession to which she trusts her life, doubly precious at that eventful period, should hazard it negligently, unadvisedly, or selfishly.” We always follow that advice. For white women. Black women and their babies are from that moment guaranteed to be more vulnerable to everything, including COVID-19.

In the pandemic, it’s good to stay home if you can. Most black people can’t. Their work requires that they expose themselves to others on public transportation and at their jobs. They are some of the doctors and many of the nurses and respiratory therapists, but they are also overrepresented among the cleaners and sanitation workers, the delivery people, the workers in groceries and restaurant kitchens, and many others who can’t stay home where it’s safe.

But that’s not all. Crowding is good for the virus, and it is much more of a problem for blacks than whites.  Poverty too. Lack of education. Lack of trust in authority (with good reason). Lack of clean air (the virus loves dirty airways). Polluted water. Lack of access to healthy food, which is much more expensive than junk food and much harder to find in black neighborhoods.

Black men are overwhelmingly over-represented in prisons in this country, and given that prisons are well known hot spots for COVID-19, they become another tool of structural racism in the pandemic. Given that incarcerated men are forced to work, manufacturing license plates and the like, incarceration of black men has been seen as a modern form of slavery.

The water crisis in Flint, Michigan, where the government was discovered to be pouring lead into black homes and poisoning children’s brains, has proved to be a problem in many other cities. The disparity between blacks and whites in wealth is far greater even than the disparity in incomes; white American families’ wealth is stored mostly in their homes, which many fewer black people own.

These homes, this wealth, is passed from generation to generation among whites, and in every generation it becomes a more solid foundation for permanent disparities in education, because schools in America are funded locally, from taxes on homes that whites are much more likely to own.

But in addition to the structural racism that withholds health, medical care, wealth, homes, education, opportunities, fruit, vegetables, and water, we have to add air: “I can’t breathe.” So said an unknown number of black police-chokehold victims, 3,446 black lynching victims, and 16,000 excess black coronavirus victims, so far.

If you have easy access to air, be grateful. Not everyone does. Breathe out. Breathe in. Don’t take it for granted.

Stay safe and be well, if you can,

Dr. K

PS: Many of you have been asking me whether I think you should come back to campus. This article should help you decide. As always, you should weigh the risks and difficulties you may face where you are staying now; some people may be better off on campus, assuming it really is open to you a few weeks from now.

Lightning, Thunder, Flash Floods…Drownings

“Obviously if you do more testing you’re gonna see more cases but the increases that we’re seeing are real increasing in cases, as also reflected by increasing in hospitalization and increasing in deaths.”

           Dr. Anthony Fauci, Congressional Hearing, July 31

“It’s very frustrating as an epidemiologist to see these cases at numbers continuing to rise without a national strategy, without adequate testing, without contact tracing as we need it—all of the things we’ve been talking about for months and months and these numbers are going to continue to go up until we do have these things in place.”

           Dr. Ann Remoin, UCLA, August 2

“What we are seeing today is different from March and April. It’s extraordinarily widespread.”

           Dr. Deborah Birx, White House task force, August 2

“It’s like a policy of mass human sacrifice.”

           Rep. Jamie Raskin, D-Maryland, Congressional Hearing, July 31

Dear Students,

At this writing, a tropical storm is progressing from the Caribbean up the east coast of Florida and will proceed north from there, affecting to some extent even the northeastern U.S. This is below hurricane status but still has hurricane-speed winds and has badly flooded some Caribbean islands. Storm surges will follow after the wind and rain die down. There have been drownings. They will be very sad and perhaps to some extent avoidable.

But as you know if you’ve been following my updates, the drownings in the title above are metaphoric—the deaths are all too real, but they do not involve storm waters. Americans are drowning and dying in the flash floods of viruses, being killed partly by the accumulation of fluid in their lungs as part of the crash of lung and heart function under viral attack. And the numbers of dead are hundreds to thousands of times higher than will be caused storm drownings.

So: our metaphor likens the features of a storm in weather to the features of the resurgent viral pandemic. You know I am not impressed by a surge in cases alone, if only because our mendacious political leaders falsely claim that more testing leads to more cases. For the record, once again: it is a lie that we do more testing than any other country, and it is a lie that 99 percent of the cases detected are benign. There are simple ways to use case records to refute these lies, such as rising or falling ratios of positive tests to total tests, but I decided not to get into an argument with unscrupulous men who have the most powerful megaphones in the world. I decided to wait for a measure that has no relation at all to the amount of testing: hospitalizations.

I suggested we think of the case surges as lightning and the hospitalizations following as thunder. As we began to see a month ago, the lightning strikes across the southern half of the nation were followed a few weeks later by rolling thunder. Hospitalizations surged, hospitals overflowed, health care workers were overwhelmed, and in general the southern states that had been feeling superior to New York followed exactly in New York’s path, in a way that was as predictable as it was completely unnecessary, since New York had blazed the path—both on the way up and on the way down.

I said at that time that I was not sure that deaths would follow hospitalizations, because the average age of victims was younger, and the treatments for advanced cases were better. I said that if the cases were lightning and the hospitalizations were thunder, the next stage could, but hopefully would not be, flash floods (overwhelmed lungs and hearts) and drownings (COVID-19 deaths).

This hope was dashed, and the surge in deaths is here. That is why Dr. Fauci told Congress on Thursday that the increase in cases is real, “as also reflected by increasing in hospitalization and increasing in deaths,” contradicting the lies of his boss and the leaders of several southern states.

 

Bad News

  1. The huge surge in America’s cases in June, which did not occur in any “advanced” country (or even in countries like Georgia, Rwanda, and Uruguay) was not a second wave, it was a devastating extension of the first wave. All advanced countries and some developing ones completed their first wave by reducing cases to tens or hundreds per day. The lowest we ever got was 20,000 a day, and now we have 67,000, more than double the mid-April maximum of around 31,000. Every day.
  2. Rep. James Clyburn, House Majority Whip, chairing Thursday’s congressional hearing on the coronavirus, showing the surge

    These cases are not caused by increased testing, and the U.S. does not have a good testing program. Our per capita testing is behind a number of other countries, who are testing more and finding fewer cases. Also, we are doing the wrong kind of testing, taking an average of four days and often much longer to get results. These results are useless for contact tracing. As Bill Gates said months ago, what are you supposed to do, send apology notes to the people you infected before you knew your own result?

  3. But then again, we do not have serious contact tracing, certainly not where the epidemic is worst. I and many others said months ago we would need an army of contact tracers, and we barely have any. It may be that with the numbers of cases we have now (at least 4.5 million), contact tracing is no longer a possible strategy for controlling the disease. Imagine contacting all the 67,000 new cases each day, finding all their contacts, testing them, and isolating those who (a week later) turn up positive, and then contacting their contacts, and—you get the idea.
  4. Nationally, hospitalizations are clearly up again, the “rolling thunder” I wrote about on July 9th. This, as I showed you, was especially true in 20 states, and now it is true in more. Even averaging in the big declines in the northeast, weekly hospitalizations per hundred thousand were around 10 in mid-April, 4 in mid-June, and back up to 7 in mid-July. Multiply each of those numbers by 3,300 to get the approximate totals. Further increases are likely.
  5. Daily deaths in the U.S., the best indicator of the progression of the pandemic, peaked in mid-April at around 2,300. They bottomed in late June at around 550. As of today they have been over 1,000 for the last few days. The increase in July was steady, large, and real. Bear in mind that these national figures average in an ongoing decline in deaths in the northeastern states, so much of the rest of the country is at an all-time high. Deaths are a lagging indicator, so they could go higher. Black, Latinx, and Native American people are affected much worse than whites. Prison inmates, nursing home residents, and workers forced into dangerous conditions in meat packing and other workplaces are most at risk.
  6. All the above statistics were coordinated, analyzed and reported by the Centers for Disease Control, a collection of 1700 scientists ideally suited to this task. It was taken away from them two weeks ago and placed in the hands of the much less experienced and much more political Department of Health and Human Services. The only reason I can see for this change is that the people in power in Washington were not satisfied with their efforts to muzzle the CDC and distort its work, so they just admitted what they were doing and made the collation of statistics purely political.

 

Good News

  1. The first vaccine to enter Phase 3 clinical trials is the one being jointly developed by the biotech company Moderna and the National Institutes of Health. This is a real-world trial in which 15,000 people will get vaccine and the same number placebo, which gives it sufficient power to see whether the vaccine protects people from community spread, and whether it is safe. It allows representation of age, sex, and minority populations. It is an mRNA vaccine of a type not approved for human use before. (For more on different vaccine types, see my update of June 20th.)
  2. The University of Oxford/AstraZeneca vaccine, based on a chimpanzee adenovirus carrying coronavirus genetic information, is expected to start Phase 3 in August, and the Pfizer/BioNTech one, like Moderna’s an mRNA vaccine, in September. This website monitors vaccine progress. “Experts estimate that a fast-tracked vaccine development process could speed a successful candidate to market in approximately 12-18 months – if the process goes smoothly,” the website says. I think that means 12-18 months from when they started earlier this year. Roughly 150 vaccine projects are under way worldwide, the above three being among the five prioritized in Operation Warp Speed (stupidly named because it will increase anti-vaxxer rejection).
  3. Dr. Anthony Fauci, the nation’s top infectious disease expert, did an amazing job Thursday testifying to Congress for almost four hours (with a little, actually very little help from two other officials, and a lot of speechifying from Representatives of both parties) before the House Select Subcommittee on the Coronavirus Crisis. He managed to thread the needle of telling the truth without saying anything that might get him fired, something no other government scientist or physician can do. But if you want to hear the real Dr. Fauci in a real conversation with other scientists, being himself and saying what he thinks and knows without pausing for many seconds before carefully answering, listen to the July 17th episode of This Week in Virology (TwiV-641).
  4. Treatments are also being sought throughout the world. The ones working now are: Remdesivir, an antiviral developed for Ebola; dexamethasone, a tried and true general-purpose anti-inflammatory; and convalescent plasma (probably). On the near horizon are monoclonal antibodies derived from convalescent plasma, other anti-virals, and combinations of anti-virals. Remember that a triple antiviral therapy changed HIV/AIDS from a deadly to a chronic disease, and plays a vital role in limiting spread. (Contrary to my own hopes, since I safely took it for malaria prevention, hydroxychloroquine doesn’t work. Also, ingesting or injecting bleach or other cleaning products will kill you.)
  5. The new recommendation of face shields or goggles along with mask wearing, social distancing, handwashing, and reversal of some of the most ill-advised state openings (bars, indoor rallies, packed houses of worship, etc.) all show promise of bending the curve downward again—cases first, then hospitalizations, then deaths—across the southern United States. Midwestern and North Central states have yet to be walloped by the two-by-four of COVID-19, and they are not learning from watching the suffering of others, so they are clearly next.
  6. The most exciting new development that I have heard about recently is a revolution in testing proposed by Michael Mina, a virologist and clinical pathologist at the Harvard School of Public Health. Rapid, less accurate testing is the key. (Abbott’s ID Now test, which I told you about on May 12th, is only one example.) The gold standard, PCR, is very accurate, but if it takes a week or more to analyze it is almost useless. Strips of cardboard mass-printed with molecules that detect virus in swab samples have not been widely deployed yet because they are not considered accurate enough. However: They are accurate enough if used when a person has enough virus to be infectious. At $1 a day, they can be used often by everyone, with results in minutes.

I want to say something about school and college openings, which are starting now. This is a mass experiment, with the lives of students, teachers, parents, and grandparents being put at risk, with conflicting guidelines about how to do it, and with low likelihood of compliance with guidelines anyway.

Major League Baseball is failing at safe reopening, even with their vast wealth and tight organization. More than 6,600 cases have been identified on college campuses that have mostly not yet opened for the fall semester. Young children (usually) do not become very sick from this virus, but they are quite effective transmitters of it to each other and to adults. Middle and high school kids are more effective spreaders. What has happened at summer camps and in the first school openings is not reassuring.

Rebekah Jones, a scientist fired by the governor of Florida for refusing to fudge the state’s statistics the way he wanted her to, said on July 8th, “If schools are opening next month, then we’re on a third wave of this first wave of catastrophe.”

Black leaders were in the news this week. Former President Barack Obama spoke brilliantly at the funeral of civil rights giant and “Conscience of Congress” John Lewis, whose last live appearance was at a Black Lives Matter protest. He died of pancreatic cancer. Rep. James Clyburn, Democrat of South Carolina and House Majority Whip, chaired the hearing of the Subcommittee on the Coronavirus Crisis, where he and Dr. Fauci told the truth. Herman Cain, a leading black Republican and former presidential candidate, died of COVID-19, which he probably caught while proudly attending a crowded Trump rally in Tulsa, Oklahoma, on June 20th.

Stay safe, you know how.

Dr. K

PS: Please don’t rely just on me. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York Times Coronavirus Resource Center (NYT).

 

 

Readin’, ‘Ritin’ & Russian Roulette

            “We can’t become immune to this level of suffering…Georgia is in no shape to open its public schools in most of the state, the virus levels are too high.”

                        Dr. Ashish Jha, CNN, August 10th

            “I don’t know how long we’re gonna keep playing Russian Roulette with our children, Andrea. It’s not safe to do.”

                        Dr. Lipi Roy, Andrea Mitchell show, August 13th

Dear students,

My grandson proudly started third grade this week. Virtually. The teacher and the school are in Georgia, but he and his family are in upper New York state, which thanks to the leadership of Gov. Andrew Cuomo and the discipline of New Yorkers, is practically virus free. His sister will also be taking full advantage of the beauty and safety of upstate New York, as she attends a Georgia kindergarten virtually.

On the other hand, thanks to the “leadership” of Gov. Brian Kemp of Georgia—along with the lack of discipline of its citizens—hospitalizations and deaths in our state have climbed relentlessly. My newest grandchild and his two moms were hiding out in our house in Atlanta from early March until his six-month birthday in late June. That was because Atlanta was much safer than their home city, Brooklyn. But by June Atlanta and Brooklyn had changed places, and they are much safer in their home than they would be in ours

Dr. Sanjay Gupta, who lives in Georgia, weighed all the facts, including his three daughters’ need for education and a normal life, and he and his wife decided they would start school virtually. They did this after examining the school carefully and concluding it was taking all recommended precautions.

 

Photo by the very brave 15-year-old Hannah Waters of the unsafe opening of her school

Georgia is famous now for the chaos and recklessness of its school openings. The photo of the school hallway, which you’ve seen if you haven’t been hiding under a rock, was taken by 15-year-old Hannah Waters, during a class change at her Dallas, Georgia high school. She was suspended for her pains, until an outcry forced school authorities to reinstate her. Meanwhile they threatened other students who might also be considering blowing a whistle on this deadly situation.

Hannah Waters is famous now too, because her photo immediately went, um, viral. She’d been planning to return to school, but students and faculty there began testing positive. There are at least 35 cases and counting, so Hannah will be learning virtually.

Let’s be clear though: the word “suffering” used by Dr. Jha above, and the word “deadly” in my last paragraph, do not apply to Hannah’s fellow students. They are very unlikely to suffer much and extremely unlikely to die. But this is not true of the teachers, cafeteria workers, and janitors. And it is not true of the parents and grandparents of the students. And it is not true of the others in the community they will infect.

Hannah’s fellow students will bring suffering and death to others, as they have throughout the pandemic, without suffering and dying themselves. This, we know, is the virus’s evolutionary strategy, and it is working like a charm. The virus can pervade the crowd of kids in that hallway like an invisible toxic gas or radioactive rays, except that unlike the gas or the rays, the kids can take the virus anywhere.

The chaotic process of Georgia schools and school districts opening, finding infected children, and closing down again has been so widespread and bewildering it’s frankly impossible for me to follow, and it’s happening in much of the rest of the country as well. Cherokee County, an Atlanta suburb, opened on August 3rd by unanimous decision of the school board, and reported that 1,193 cases of COVID-19 were quarantined by August 12th.

Some districts and counties around the state will have live options. The Atlanta City Schools will be all virtual, and of the nearest counties, Dekalb, Cobb, Fulton, plus the suburban cities of Decatur and Marietta, 100 percent will be 100 percent virtual. Go a little farther away from Atlanta and you’ll still be eligible to choose to put your kids at risk. Except that these rules are changing day to day.

Very confusing. Easy to follow though is the relentless Presidential drumbeat of Have-to-open-Have-to-open-Have-to-open-schools. The nation is marching to a different drummer. 35 of the 50 largest school districts in the U.S. will open online only, and others, like New York City, are reconsidering their plans for a safe hybrid open.

Let’s consider what little we know about COVID-19 and children. First, the good news, which won’t take long to relate: very few children have gotten very sick or died from the virus since the beginning. That’s good news for the virus too, since these kids can mobilize it like crazy.

Some other bad news:

  1. Kids between 10 and 19—Hannah’s classmates—can transmit the virus just as well as adults. A new, large, careful South Korean study of 59,000 people who had been in contact with one of 5700 infected cases showed that kids 10-19 years old are very effective at infecting others. This study was done during a period of school closure.
  2. Kids under 10 can also transmit the virus, and have been important vectors bringing it home to their families. The South Korean study above found that kids under ten were less likely than older kids and adults to transmit the virus to others, but they can and do transmit it. A new study published in JAMA Pediatrics showed that younger children carry more SARS-CoV2 viruses in their nose and throat than older children or adults. As Dr. Gupta notes, the jury is still out on how infectious they will be when schools are open.
  3. The impact of #2 has been limited so far, since young children have mostly stayed home. Now that millions are going back to school, we will find out just how big a deal this sort of family transmission can be.
  4. Some kids do get sick and die with COVID-19. For unknown reasons, a small percentage go through the same process as adults. A nine-year-old African-American girl became the fifth child in Florida to die of it; this was in July, and there have been many more since. Her family took her to the hospital, they sent her home, and she collapsed due to heart failure. SARS-CoV2 attacks the heart as well as the lungs, in children as in adults. Her name was Kimmie, she loved unicorns and making TikToks and YouTube videos. She had a contagious goofy laugh and she had no underlying conditions.
  5. And there are also strange tragic accidents; the youngest victim in Georgia was a 7-year-old African-American boy who drowned in his bath when a sudden fever gave him a seizure; seizures are very common in children with COVID-19 fevers. It was only after his death that anyone knew he had the virus, and he had no underlying conditions.
  6. Some children develop a rare but deadly post-viral disease known as multisystem inflammatory syndrome in children—MIS-C. Four children have died of it very recently in Louisiana alone. There have been at least 570 cases nationwide. It is not the virus itself, it is a process nobody understands that is triggered by the virus. It attacks widely throughout a child’s body. A 12-year-old girl named Juliet suffered cardiac arrest and was “about as close to death as you can get” according to her doctor. Jack, age 14, woke up in agony and with heart failure and was hospitalized for ten days and sent home with residual damage. It’s a horrible disease and in the worst cases it’s a truly horrible death.
  7. And in a crowning irony, an 8-year-old named Hermione escaped on an evacuation flight from Wuhan Province in China where the epidemic first raged, only to contract COVID-19 six months later at home in America, after China had long since conquered the virus. Hermione’s father and grandparents also have the virus.

It’s worth noting that when we shut down schools in March, there were around 5,000 cases of COVID-19 in the U.S. Now as we reopen them, there are more than 5,000,000.

I know, there are places where schools can reopen safely, but many places where kids are being pushed back into school are not in that category. I know, there are ways to make schools safer, but they are not being consistently implemented and even where they are children are still getting the virus. I know, virtual learning is much less effective than live learning. Trust me, I know. I taught more than 150 students that way starting in March and will be teaching another 250 starting next week.

But somebody help me out here. Apple, Microsoft, Google, Facebook, Netflix, and Zoom (among others) have seen their shares go through the roof since the pandemic started. (Full disclosure: I like millions of others have participated, if only through retirement plans.) Is there nobody at these companies who can figure out a way to make virtual learning work better? To make it fun for kids of all ages? To get computers and tablets and broadband too into the hands of all who need them?

Our kids love screens. We fight constant battles with them to get them off screens. Now their lives depend on learning through screens. Is there no one among all the brilliant nerds and geeks in the United States of America who can design virtual learning that will engage children and really really teach them? Is there no one in the colleges of education that can ally themselves with the nerds and geeks?

I’m begging. Please.

Meanwhile, stay safe,

Dr. K

PS: In other news:

  • The United States notched its largest number of deaths in a day for the summer so far: 1500. Most recent days have seen more than a thousand deaths each. Testing remains completely inadequate in our country, and contact tracing is almost nonexistent.
  • The Russians are deploying a vaccine that is not ready for prime time—it has not been studied in anything like a proper way. Let’s hope that the people in Russia who are being used as guinea pigs get lucky. Bad vaccines don’t just fail to work, they can kill people.
  • Georgia’s governor, whom my friend Kathy calls Deathcount Kemp, has dropped his lawsuit against Mayor Keisha Lance Bottoms to stop her from mandating masks in her (our) city. Like they say down here, she whipped his butt, scared him silly, and he crawled off with his tail between his legs, where a different anatomical organ was supposed to be.

PPS: Please don’t rely just on me. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York Times Coronavirus Resource Center (NYT).

TETRIS Is Dead. So Is the CDC. And the FDA. And 188,000 Americans.

            “We are not anywhere near done with this and I think we have more days ahead of us than we have behind us.”

            Ashish Jha, MD, Harvard School of Public Health, August 28

            “The problem here is the credibility of the FDA is crumbling before our eyes. This is an agency that so many of us in the scientific world have looked up to, trusted it, we know that they have these really rigorous scientific protocols, but that’s all changed this year.”

                        Seema Yasmin, MD, Stanford University, September 2

            “Obviously there are places around the world that have been able to control this. What I’m starting to feel is the existential threat is the human behavior. I’m discouraged and frustrated… Other countries are essentially vaccinated right now, not because they have a vaccine, but because they did these things, they are back to normal. They reduced their death rates into the dozens or hundreds, not the hundreds of thousands.”

                        Sanjay Gupta, MD, Emory University, September 4

Dear Students,

You remember what TETRIS is, right?

TEsting. Contact TRacing. ISolation.

Those are the “these things” Dr. Gupta is referring to above, along with mask wearing and social distancing, that have enabled other advanced countries with large populations to have hundreds of deaths from COVID-19, while we have hundreds of thousands of deaths.

Good News:

  1. Many other countries have got this under control, and they are immediately using TETRIS to bring any new breakouts under control. Per capita hospitalizations and deaths are a tiny fraction of what they are here now, and that gap will only widen as they prevent and control their second wave—which we won’t have because never controlled the first wave, only smushed it down and smeared it, and that only a little. Our second wave will come on top of an enduring first wave.
  2. Cases per week have gone steadily down in the U.S. for at least a month, and that is good news if real. As you know I was skeptical of case rates when they were going up because politicians were saying daily that the rise was only because of more testing. Now when we know testing is going down, because it was badmouthed by politicians and the CDC recommended doing less of it. You don’t hear politicians saying one reason for the decline in case rates is less testing. Deaths, being a lagging indicator, have gone down only slightly. Also, the southern states are doing somewhat better while the midwest is having its big first wave, and the northeast is rising but from very low levels.
  3. Vaccine development is proceeding around the world. Phase III testing is going slowly and will be difficult to interpret because of marked underrecruitment of minority people, who are way overrepresented among the cases, hospitalizations, and illnesses.
  4. Finally, the sum total of well-designed research has shown that steroid treatment (like dexamethasone) reduces deaths in patients severely ill with the virus. Death rate for 1,700 people across 12 countries was 32% with steroid treatment and 40% with placebo. That amounts to saving 1 in 5 very sick COVID-19 patients who would otherwise have died.
  5. There is a lot of talk about, and even some progress in, cheap rapid testing, but the deployment of these tests has been slow due to manufacturing bottlenecks and general badmouthing of testing by politicians. Nevertheless as these tests become more available, we should make progress against our U.S. pandemic (near the world’s worst), but that would require a revival of TETRIS and a modification of behavior based on test results.
  6. The CDC has issued a mandate against evictions until January 1, as a public health measure. But the CDC does not have a police department and it will leave enforcement to local authorities. There are many exceptions that would still allow people to be evicted, and after January 1 all those protected will owe all back rent. Perhaps there will be another Congressional stimulus package by then to soften that blow.

Bad News

  1. The latest models from IHME and Johns Hopkins agree on where we are now, and the graph shows three projections as to where we are going, depending on one of threee assumptions. The most likely scenario (dark blue line) shows where we will be on January 1 if we keep on doing what we’re doing: 300,000 deaths total, and adding about 3,000 deaths a day. If we had universal mask use, that total would be around 230,000 and the daily deaths would stay under a thousand for a while in the fall before doubling or tripling again with the cold weather (more time indoors) and the flu season giving many both viruses. If we continue to have easing of social distancing mandates, we are expected to have 600,000 total deaths and almost 12,000 cases a day by years end. You will hear some politicians say that these projections have been wrong throughout in overestimating the future damage. This is a lie. Except for the very beginning when nobody knew anything, the IHME reference scenario has been too optimistic. Testing is going down or staying at low levels in most states, contact tracing is beyond inadequate, and isolation is accordingly moot.
  2. We’ve learned that infected people are most likely to infect others during the first week or ten days of significant viral load, which is why superspreader events attended by healthy people are the major U.S. source of viral spread right now. These are most likely to be indoor, largely unmasked, crowded events. Viruses linger in the air for hours in many such spaces. These superspreader events have included Mardi Gras, church services in Arkansas and elsewhere, funerals in Georgia and Ohio, and a Boston meeting of executives at Biogen, a large molecular technology company, among many others. The Sturgis motorcycle rally in South Dakota in early August has resulted in at least 70 cases so far (it’s difficult of course to track folks from an event like that). These are in addition to the well known virus petri dishes known as cruise ships, prisons, nursing homes, meatpacking plants, choir practices, and now colleges and universities. Luck matters, since one person can be a key superspreader, and neither you nor they know which one in the crowd they may be.
  3. In the past month or two there has been a wave of oh-so-careful openings of colleges and universities, and now there is a national wave of even faster closings. (See my update predicting this and explaining why it was inevitable.) Despite evidence of universities acting to cover up coronavirus cases, we know that there have been outbreaks at many, and they are rapidly spreading the virus to the local communities. As of September 3, “More than 100 colleges have reported at least 100 cases over the course of the pandemic, including dozens that have seen spikes in recent weeks as dorms have reopened and classes have started. Many of the metro areas with the most cases per capita in recent days — including Auburn, Ala.; Ames, Iowa; and Statesboro, Ga. — have hundreds of cases at universities.” Thousands upon thousands of students are now being sent home, where they will bring virus to their communities. (See my update on “Bye-Bye Grannie.”)
  4. “Sloppy coronavirus immunity” is a term that has been used to describe the handful of documented cases of people getting the virus twice (it also applies to other coronaviruses, like the common cold). At least one of the reinfected patients caught a different strain, so as you know viral evolution will play a role. It should also apply to the question of how effective any immunity from a future vaccine will be, and how long it will last. Vaccine refusal in the U.S. has been at high levels for decades, and this vaccine will be no exception, unless the rushing of it and the prior erosion of public trust swells the ranks of anti-vaxxers to unprecedented levels (especially if, as is likely, it requires two shots). Imagine a COVID-19 vaccine that gives us about the same level of protection as the seasonal flu vaccine (~50%), lasts about as long (<1 year), and is accepted by 50% of the population. So we’d have seasonal protection for a quarter of the population, have to repeat the shots every year, and we’d still have to have over a hundred million more cases and hundreds of thousands more deaths to get to herd immunity.
  5. Harold Varmus, a Nobel Laureate and former National Institutes of Health head, and Rajiv Shah, president of the Rockefeller Foundation, published an article on August 31 called, “It Has Come to This: Ignore the CDC.” Their statement is based on the latest of a series of false, incompetent, and frankly craven pronouncements of “advice” issued or changed by the political appointee at the top of that organization, obviously in response to pressure from those who appointed him, non-doctors and non-scientists all. When Stanford’s Dr. Seema Yasmin said (above), “the credibility of the FDA is crumbling before our eyes,” she was likewise referring to the latest of multiple instances of knuckling under by the political appointee directing that organization. This would be (together with the CDC) following orders from non-doctors and non-scientists in the White House to order states to prepare for widespread distribution of a vaccine by November 1 or sooner. These non-experts say that it is purely coincidental that this is two days before our national election on November 3. The vaccine will be deployed with great fanfare on the basis of far-from-complete Phase III trials, it will put minority people at greatest risk, and there will no time to find out what damage is done by this half-baked but highly touted vaccine before people vote.
  6. The principal advisor on the pandemic in the White House is now Scott Atlas, MD, a neuroradiologist and health policy wonk at Stanford’s right-wing Hoover Institution. Dr. Atlas has no qualifications in infectious disease, epidemiology, or virology, but he is happy to parrot the long-standing White House views playing down the virus. He has denied reports by several reliable sources that he argues openly in Task Force meetings with Dr. Fauci and Dr. Birx (the real experts) and he has more than hinted that he favors “herd immunity” as a strategy, which would entail far more American deaths than the huge numbers projected above. Like an overpopulated herd of deer, we would be culled.

I must say it surprised me to see the expression on Dr. Gupta’s face and hear him say he is “discouraged and frustrated.” I am too, and that’s why it’s been so long since my last update. Frankly, I expected more from him. He’s one of my greatest heros—a top-flight brain surgeon and medical school professor, the most inspired and gifted medical broadcast journalist who ever lived, and, I’m proud to say, our colleague at Emory.

My expectations for him were totally unfair. Unlike me, he has rubbed his nose in this stinking situation all day every day for eight months. Also unlike me, he probably has not had a dark view of human nature lasting a lifetime, based on a different branch of science—behavioral biology. So yes, he has a right to see the “existential threat” in “human behavior,” and he has more right than me to feel discouraged and frustrated, having worked his heart out 24/7 to prevent things from getting anywhere near this bad. Which it wouldn’t have if people had listened to him. It will still save many lives if people start listening now.

Mardi Gras: outbreaks. Memorial Day Weekend: big outbreaks. July 4th weekend: ditto.

So we’re in the Labor Day Weekend now.

What do I think is going to happen?

What do you think is going to happen?

Stay safe,

Dr. K

PPS: Please don’t rely just on me. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York TimesCoronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter.

Hope

Dear Students,

I’ve waited almost a month this time between updates, the reasons being (aside from having other responsibilities) that I saw no basic change in the situation, no real news that I felt a need to help explain, and my own general discouragement with the situation. Also, I always want to be able to offer hope, something we all badly need more of.

There is certainly news now. Hope is also the name of the former teenage model who rose to become the communications director of Fox News and then one of the closest aides to the President of the United States. Yesterday it was announced that she had tested positive for COVID-19, and that she had symptoms. Since she had been in constant close contact with President Trump, he and his wife, the First Lady, also a former model, were carefully tested and as of early this morning, both have the virus.

I mention the modeling because Mr. Trump has always tried to associate with beautiful women, and beauty carries with it a certain aura of superiority and invulnerability, but the virus doesn’t see it that way. Hope Hicks has symptomatic COVID-19, and Melania Trump is carrying, probably has infected others with, and may soon have symptoms also caused by SARS-CoV-2. They have joined the ranks of some seven million other Americans who could not avoid this infection.

The President also has thought himself invulnerable and has consistently acted as if he believed it. He has minimized the virus and failed to take or encourage needed precautions. Now the virus has proved him wrong. He has not only failed to protect the 208,000 Americans who have died from the virus and the millions more who have suffered in surviving it—some of whom will suffer for many years to come—but he has failed to protect his 31-year-old trusted and trusting aide, his wife, or himself.

There is a German word you may know, Schadenfreude, which English speakers appropriate for a certain emotion that English has no singular word for. It means literally something like damage-joy,* or taking pleasure in someone else’s suffering. It’s a natural human reaction, and if we are honest with ourselves, when we see others suffering we often have the fleeting thought, It’s not me.

Taking joy out of the suffering of people at the apex of American power is as wrong as it would be to celebrate the illness of anyone else, and as an MD I would be violating my oath if I felt that way. So I do all I can to suppress these unethical sentiments, and suppression starts with knowing myself, knowing that such feelings may be there.

But I have to say objectively that there is hope, the other kind of hope, in the fact that these people are now infected, and that others at the top are being tested, quarantined, and may become infected and even ill. There is poetic justice, surely—not the same as Schadenfreude—in the very powerful people who have failed to provide and even discouraged TETRIS (Testing, Contact Tracing, and Isolation) being put through this basic process themselves and, unless they are utterly stupid, being grateful for it.

But where is the hope here? It lies, quite simply and I think strongly, in the fact that the scores of millions of people who have believed the lies these people told them—the virus is no big deal, it only affects a few people, it will disappear like a miracle, we already have a cure in hydroxychloroquine, you can inject disinfectant, masking shows weakness, a vaccine is a few weeks away, we have turned the corner—these many millions of believers will now watch the leader who has lied to them, and those closest to him, directly face the consequences of his own mendacity, ineptitude, and forceful opposition to science.

I hope—I hope—that many lives will now saved by the example, this time unwilling, set by the most prominent man alive, the same man who has up to now set the wrong example and thereby caused scores of thousands of needless deaths. At a minimum, I hope that he will  not go to Wisconsin, the state with the worst reversal of fortune and the fastest rise in cases, and speak to crowded rallies of mainly unmasked people, as he had planned to do this weekend. Those cancellations alone will save lives.

I hope that, going forward, many of those who worship President Trump as a savior, almost a god, will now see that their idol has clay feet, that the virus is not overblown, and that they should start to listen to someone other than him if they want to protect their families and themselves, as he failed to do. This is not taking pleasure in the fact that he and those closest to him are infected. It is simply expressing the hope that lives will be saved by this new example—or more exactly, counterexample.

As the graph shows, we are turning a corner. We have probably entered the second wave, without ever as a country really leaving the first behind. With five percent of the world’s population we have a fifth of the world’s cases and a fifth of the world’s deaths, largely because Mr. Trump has been a never-ending superspreader of misinformation about the pandemic of COVID-19. Maybe now he will, against his will, become a source of truth.

Recall that the second wave of the pandemic of 1918-19 was much larger and more devastating than the first. That may or may not happen this time. To a large extent, it’s up to us. I hope that by this time next year we really will have turned the kind of corner that puts this behind us, but what happens between now and then depends on what we have learned and what we do.

Don’t be among the college students who have already played a large role in starting the second wave. Don’t go to parties or mix in crowds. Keep your distance even in small groups, even in pairs, unless you have quarantined together. Wear a mask wherever you may encounter other people. Wash your hands for a count of twenty frequently. Get a flu shot or risk getting and spreading both infections at once.

We will get through this, and as I have said before, if you do the right thing you will live to brag to your children and grandchildren about how you survived and how you protected others. Your stories will help them get ready for anything, because they will learn how you were ready for this.

Stay safe,

Dr. K

*I had mistakenly translated schadenfreude as “shadow-joy.” I mistook schaden (damage) for schatten (shadows). Thanks to Shebardigan and Misha Pless for correcting me.

PS: Please don’t rely just on me. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York TimesCoronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. With thanks to Prof. Craig Hadley, I also strongly recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning, which has outperformed most others in its projections.

Sick Man, Sick Land

           “All of the information medical professionals want to know, all the things that are happening, vital signs, what his clinical exam looks like, what does he look like as a patient, are we treating the actual patient or are we treating a political ideology or a title or an office, and without that information at your disposal it’s hard to think about what are the processes going forward, how are we keeping this evidence based, how are we keeping this patient centered, are we doing the best we can to manage this actual human, this actual person‘s disease and if we are, we need to be transparent with it.” Dr. Myron Rolle, former NFL player, now a Neurosurgery Resident playing defense on the front lines of COVID-19, Massachusetts General Hospital, discussing the White House handling of Donald Trump’s case

            “Do you think these rallies like the White House event a few weeks ago are likely to become superspreader events?” Jake Tapper, CNN

            “Yes, I really do, and the virus is the constant here, it is very contagious. You put people together for long periods of time, longer than 15 minutes, closely clustered, maskless, those are the ingredients for a superspreader event. The challenge has been there are so many newly infected people every day in this country, contact tracing has basically become a futile task. How do you contact trace 50,000 people every day? It would be an entire sector of our society dedicated to doing that. But what we did and we have some reporting on this, we were able to go back to these cities, Tulsa you mentioned, Phoenix, and then Oshkosh, Wisconsin, in the beginning of August. you know after people are exposed to the time they get hospitalized is typically a few weeks, right?… It’s hard to actually contact trace back to the event, but hospitalizations is a truer measure. In Tulsa as you mentioned Herman Cain [former presidential candidate and Trump supporter] may have been exposed at that event and subsequently died. But we know hospitalizations went up three-fold a few weeks after Tulsa. We know in Phoenix hospitalizations were about 2000 per day at the time of that rally and went to 3000… Oshkosh—hospitalizations went up 20 percent within that time period after the rally so, again, cause and effect is always gonna be challenging to draw but look what happened in all the cities a few weeks after. People got sick. Hospitalizations went up. Was it directly related to the rallies? We may never know. But in places where the virus is already spreading like this? It’s really challenging.” Dr. Sanjay Gupta, CNN

            “The next 6 to 12 weeks are going to be the darkest of the entire pandemic.” Dr. Michael Osterholm, leading epidemiologist, Meet the Press, Sunday, 10/18

            “Its not like it’s a mystery anymore of how to beat this thing, it’s just a matter of implementing what we know.” Dr. Ashish Jha, leading epidemiologist, 10/19

 

Dear Students,

I am writing in a different mood from my usual fact-based, hyperlinked style. My mood, I have to say, has become more meditative, and even sad. I have not avoided politics completely in past updates, but now I have come to a point where it is impossible to discuss the health of Americans in this dangerous moment in history without taking a political stand. The behavior of our current president is severely damaging to the public’s health, more so every day.

Because of his arrogance and negligence, he himself was colonized by SARS-CoV2, as were his wife, his teenage son, and many of his closest associates. He invited the virus into his body in late September, either at the superspreader event celebrating his Supreme Court Justice pick on the 26th, or in the next few days of intensive, close, maskless debate practice.

His young aide Hope Hicks became ill on Thursday, October 1st, and was confirmed to have the virus too late to protect many, including the president. Whether she gave it to him or got it from him is impossible to say, because of consistent lying about the president’s frequency of testing, not to mention refusal to reveal the results. In the small hours as Thursday turned to Friday, it was announced that both he and the First Lady had tested positive.

Friday afternoon he was ‘coptered to Walter Reed Army Hospital and admitted. After a number of days of concealment and lying by his doctors—both of which are still going on—we learned that he had had a significant fever, that his blood oxygen had been below normal on at least two tests, although no numbers were offered except that it was below 94 and above the low 80s. Since he had serious lung symptoms and signs, it is inconceivable that he did not get a chest X-ray, a chest CT, and possibly other lung studies; however, the results of those studies were not shared with us.

Similarly, we were never told the reason for his impromptu visit to Walter Reed Hospital a year ago. Lies were told first about it being an early start to his annual physical, then about it being a follow-up. He and his doctor officially denied that he had been evaluated for transient ischemic attacks (temporary strokes), but he bragged about his performance on a cognitive test with a very low ceiling, meaning it was only intended to rule out big brain problems such as stroke and dementia.

The first medical information we got about him was a letter from his personal physician saying he would be the healthiest man ever to become president. Obviously that physician could not have made the comparison, and he admitted that Trump had dictated the letter to him. Later we found out that he had a cholesterol in the 260s, since brought down. He is also reported to have a common cardiac problem, which based on his cholesterol levels in the past and on his obesity, would most likely be coronary artery calcification.

That’s about all we know of his underlying conditions (other than age and body mass index) relevant to his recent case of COVID-19. Based on the medications he was given, it is widely agreed that his doctors at Walter Reed—some of the best in the world—were very concerned. The main medications were:

  1. An experimental antibody medication that the president refers to as Regeneron—the name of the company that makes it, since the drug does not yet have a name;
  2. Remdesivir, an antiviral medication that many (including me) have thought was very promising but which a new WHO study (published since Mr. Trump got it) has cast doubt on;
  3. Dexamethasone, a standard steroid treatment for inflammation in many diseases, proven to save lives in advanced COVID-19.

Mr. Trump got all three treatments within the first day or two of his symptomatic illness, very unusual for dexamethasone. His doctors were either extremely worried from the outset or they were giving him VIP treatment, not always beneficial to the VIP.

He was also given supplemental oxygen, only instituted because of low blood oxygen and/or difficulty breathing, and fever-lowering medications, including dexamethasone. We never heard anyone on his medical team mention those medications when they repeatedly announced that he was fever-free.

He was released from the hospital Monday evening. He did not speak spontaneously but he had made a few brief videos for public consumption. After climbing the White House steps he removed his mask, appeared to have difficulty breathing, and did not speak.

If his course of dexamethasone was usual, it would have lasted ten to fourteen days. We have not been told if or when his dexamethasone was tapered to zero. If he was indeed tapered and has not been taking it for the past week or so, then it is quite possible he had a mild case, less serious than most who are hospitalized.

Because so little is known about the monoclonal antibodies he took, we can’t be sure when his own antibody response would be expected to kick in, but 21-25 days is a reasonable expectation after the Regeneron antibodies clear. We do not know if or when he stopped taking dexamethasone.

These questions are important for two reasons: 1. Is he immune or even partly immune to reinfection? 2. Is he still potentially subject to self-attack by his own immune system, which happens in so many COVID-19 patients—including, probably, his wife, who yesterday dropped out of her first campaign event in months, reporting a persistent cough.

COVID-19 is a two- or three- phase disease in the serious cases. First, the virus does its nasty work on your lungs, but it usually remains in the cells lining the lungs and bronchi. In most cases it does not enter the bloodstream or affect other organs on its own. It tends to stay where you breathed it in. It can kill you in this phase, but often doesn’t.

Phase 2 is your immune system response. This produces an attack on the walls of blood vessels everywhere in your body. This, your own body’s response, is usually what damages your heart, kidneys, brain, blood vessels, and other organs. This is very often the cause of death, including in children. By the way, the same was true of the influenza of 1918-19, although most deaths were in young adults, who are relatively protected from COVID-19 death.

Phase 3, which we are learning occurs in more people than we thought, is what has been called the “long haul.” Long haulers have symptoms, probably due to the lasting effects of inflammation, for months after recovering from the main part of the illness. The virus is too new for us to know whether these months may turn into years.

When Former Governor Chris Christie, whose COVID-19 was almost certainly contracted while coaching the president for the debate, left the hospital after a more serious case than Mr. Trump’s, he said loudly and clearly that he had been wrong, that he had let his guard down, that he had underestimated the virus. He also said that everyone should take the virus very very seriously.

Mr. Trump said the opposite. He told us not to be afraid of the virus, that he had beaten it and we could too; we should refuse to let it dominate our lives. He said that he had been cured by “Regeneron,” a completely experimental treatment no ordinary patient can get. There is no cure for COVID-19 as yet. In the days that followed his discharge, Mr. Trump showed what are very widely recognized mental symptoms caused by dexamethasone: strangely elevated mood, disorganized thought processes, and hypomania.

He soon returned to his most intense level of campaigning, making long speeches without difficulty breathing. The most likely explanation for this recovery is that he simply dodged the bullet—he had a mild, short case irrespective of his medications. The second is that he really was greatly helped by the trio of medicines he was given: the cocktail of two antibodies given to very few people in the world; the Remdesivir; and the dexamethasone started exceptionally early in his illness. As far as we know, no one has ever been given this combination of drugs with this timing.

A third, and I think distant, possibility, is that he is not yet over it. It is only 19 days since he entered the hospital. His treatment may have postponed his Phase 2, the autoimmune attack, rather than putting it permanently aside.

Mr. Trump’s public remarks about the virus since he had it are something like a worst case scenario for almost every public health expert and every family mourning a COVID death. He has stepped up his rhetoric minimizing the virus and he has held two to three likely super-spreader events per day for the last week, many in states that have rapidly rising case loads and hospitalizations. He continues to violate and ridicule the only preventive measures we have, or will have, between now and when we can be widely vaccinated, and he continues to lie relentlessly about when such vaccination is likely. He has caused, and will continue to cause, many thousands of needless deaths, and the suffering of hundreds of thousands of survivors of the virus and of the loss of loved ones.

Which brings me to the question of the other kind of illness he may have.

For years now psychiatrists have been arguing over whether it is possible to give Mr. Trump a diagnosis from a distance. The American Psychiatric Association defends the Goldwater rule, which rejects such diagnoses of political or other public figures without examining them. This organization preemptively threatened sanctions against member psychiatrists who attempted to diagnose Mr. Trump without examining him personally.

Others, including a group led by Bandy Lee, a psychiatrist and ethicist at Yale Law School, have concluded that the well-established Duty to Warn applies to Mr. Trump. This duty holds that patient confidentiality may or must be violated when the doctor concludes that the patient poses a clear and present danger to others, based on what the doctor has learned.

Few psychiatrists would claim that they can glean more information in a face to face two-hour diagnostic interview with a new patient than they already have about Donald Trump in the public record, which, importantly, goes back through his adolescence and childhood. I have an MD but do not practice medicine and am not licensed to do so. I have a lifelong interest in psychiatry and neurology but I am not qualified in either, but neither do I have anything to fear from APA sanctions.

So I will not give you a diagnosis, but I will tell you the criteria for the diagnoses that are most frequently discussed as mental disorders Mr. Trump may have.

Narcissistic Personality Disorder (NPD, DSM-5 301.81):

A pervasive pattern of grandiosity (in fantasy or behavior), need for admiration, and lack of empathy, beginning by early adulthood and present in a variety of contexts, as indicated by five (or more) of the following:

  1. Has a grandiose sense of self-importance (e.g., exaggerates achievements and talents, expects to be recognized as superior without commensurate achievements).
  2. Is preoccupied with fantasies of unlimited success, power, brilliance, beauty, or ideal love.
  3. Believes that he or she is “special” and unique and can only be understood by, or should associate with, other special or high-status people (or institutions).
  4. Requires excessive admiration.
  5. Has a sense of entitlement (i.e., unreasonable expectations of especially favorable treatment or automatic compliance with his or her expectations).
  6. Is interpersonally exploitative (i.e., takes advantage of others to achieve his or her own ends).
  7. Lacks empathy: is unwilling to recognize or identify with the feelings and needs of others.
  8. Is often envious of others or believes that others are envious of him or her.
  9. Shows arrogant, haughty behaviors or attitudes.

Antisocial Personality Disorder (ASPD, DSM-5 301.7)

  1. A pervasive pattern of disregard for and violation of the rights of others, since age 15 years, as indicated by three (or more) of the following:
    1. Failure to conform to social norms concerning lawful behaviors, such as performing acts that are grounds for arrest.
    2. Deceitfulness, repeated lying, use of aliases, or conning others for pleasure or personal profit.
    3. Impulsivity or failure to plan.
    4. Irritability and aggressiveness, often with physical fights or assaults.
    5. Reckless disregard for the safety of self or others.
    6. Consistent irresponsibility, failure to sustain consistent work behavior, or honor monetary obligations.
    7. Lack of remorse, being indifferent to or rationalizing having hurt, mistreated, or stolen from another person.
  2. The individual is at least age 18 years.
  3. Evidence of conduct disorder typically with onset before age 15 years.
  4. The occurrence of antisocial behavior is not exclusively during schizophrenia or bipolar disorder.

Not surprisingly, both of these disorders are far more common in men than in women. When a person meets the criteria for both disorders, the term malignant narcissism is sometimes applied, although it is not an official DSM-5 (Diagnostic and Statistical Manual of the APA, 5th edition) diagnosis. In neuropsychiatric terms, it seem reasonable to hypothesize that someone who meets the criteria for both disorders has a lower than average inhibitory capacity of the prefrontal cortex in relation to the impulses stemming from the amygdala.

When a man (and it would likely be a man) who meets even some of these criteria is in charge of the “land of the free,” he puts millions of people at risk. Objectively, his personal behavior resulted in his family, aides, staff, associates, and their families becoming infected with SARS-CoV2. Whether they mostly got it from him (quite possible) or got it from each other under conditions he created and insisted on, he caused them to be ill. His wife is still coughing, too sick to campaign with him. His friend and debate coach Chris Christie spent a week in the hospital with a much more severe case than Mr. Trump had, and after his release he publicly announced that he was wrong and publicly advised Americans to do the opposite of what their president is encouraging them to do.

The result has been, and will continue to be, what Dr. Sanjay Gupta explains above in his answer to Jake Tapper’s question. Yes, the President of the United States is continuing to hold one superspreader event after another, and yes, the President of the United States has caused and will cause at least scores of thousands of unnecessary deaths, which are the tip of the iceberg of American suffering.

A few hours ago, an analysis published by the Columbia University School of Public Health estimated that between 130,000 and 210,000 of the 223,000 people who have died of COVID-19 in the US to date had preventable deaths. Suppose we take the lower number and cut it in half to get to a rock-bottom minimum. That would leave 65,000 needless deaths so far, approximately the number of Americans killed in the Vietnam War.

Or, consider how news outlets and people throughout the world react to the crash of a single jumbo jet that kills 350 passengers and crew; billions of people react with pity and grief, and eventually may get angry, trying to find out why the plane crashed and who perhaps should be held responsible. My very-lowball estimate of 65,000 preventable deaths so far is the equivalent of 186 jumbo jet crashes, or around one crash every day since the first US case.

As you know, I’m not enthusiastic about predictions, but the consensus model (thanks again to Dr. Craig Hadley) has us at around 5,000 cases a week right now, rising to around 5,500 over the next month. If protective measures are relaxed, we could go to over 7,000, or if they are more strongly applied, half that. If we stay between 5,000 and 5,500, we will have added 50,000 to 55,000 deaths by New Year’s Eve. I consider that a low estimate, but we could easily reduce it to 30,000 or less, or if we are reckless enough, increase it to 70,000 or more.

Thus with this very conservative model of models, we could save at least 40,000 lives by enhancing rather than relaxing protective measures. Taking into account the advent of flu season, the effect of winter driving people inside, and the holiday season creating larger-than-usual family gatherings, the maximum number of deaths, and therefore the potential number of saved lives, could be much greater.

This is without considering the impact of Mr. Trump’s more than daily superspreader events around the country for the last three weeks leading up to November 3rd. Mr. Trump’s behavioral role in causing the new wave of the pandemic we are in would be explained if it were possible to find in him traits 4 and 7 in the NPD criteria above, and/or traits 5 and 7 in the ASPD criteria. Speaking as a lay person who has access to all public information about Mr. Trump, I think it is legitimate to state that he has those four traits. This is not a diagnosis, but it is tantamount to finding that he is an effective ally of the virus in its spread through our people.

The chart, based on Johns Hopkins University data (not projections) suggests that we are well into the third wave of the US pandemic, with a steep rise in daily cases rivalling the maximum achieved nationally in July, and still very much on the upward swing. Thirty-one states have more cases this week than last, and only one, Hawaii, has fewer.

Hospitalizations (second chart), a much better measure, are already following suit, and many states, particularly in the Midwest and Great Plains, are beginning to see overflow crises comparable to what we saw in New York in March and April and in the southern states in July. Deaths will duly surge, although not as much as in the past, since fortunately we are saving more of those hospitalized.

What caused the third wave? Many factors. Dismally prepared college openings caused youth outbreaks which caused community spread. People let their guard down in crowded bars and restaurants. The President of the United States made fun of mask wearing and encouraged people to relax other precautions. Premature school openings were often reversed because of spikes in cases, not usually harmful to children but gravely threatening to teachers, staff, and families. And spread continued in and from nursing homes, prisons, and meat packing plants.

Good News

  1. While two major vaccine trials (AstraZenica, Johnson & Johnson) were halted because of adverse effects, including a death, two other major trials (Pfizer, Moderna) are progressing well and could request emergency use authorization from the FDA by early December. The FDA vaccine group is meeting today to discuss guidelines for approval.
  2. Although Remdesivir has proved disappointing in the most recent research, it has been successful in other studies, and it just became the first treatment approved by the FDA specifically for COVID-19.
  3. Another antiviral, now called EIDD-2801 has been extremely successful in a mouse model that carries transplanted human lung tissue. Unlike Remdesevir, it is an oral medication, and could be used as an outpatient treatment very early in the disease, or even prophylactically for those with known exposure. Human trials are under way.
  4. Antibody cocktails such as Mr. Trump received (part of his VIP treatment) are under study and may prove their efficacy in time, in ongoing trials.
  5. Former New Jersey Governor Chris Christie, after an apparently near-death-experience with the virus—which he likely caught from or because of Mr. Trump—has become a strong advocate of taking the virus seriously and applying all known preventive measures.
  6. The best news is that we already have a hugely effective vaccination program: First Shot: Social Distancing; First Booster: Wear a Mask; Second Booster: Wash Your Hands; Follow-up Examination: TETRIS (Testing, Contact tracing, Isolation). This is the vaccination program that has utterly beaten the virus in quite a few other countries. Will we ever use it?

Do the right thing, be patient, this will pass, live to brag about how you didn’t get it and didn’t give it to anyone else, stay safe,

Dr. K

PS: Please don’t rely just on me. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York TimesCoronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. With thanks to Prof. Craig Hadley, I also strongly recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning, which has outperformed most others in its projections.

Hope and Death

John Berman, interviewing Dr. Sanjay Gupta, December 3, 2020:

            “But there’s every reason to think that what’s going to happen over the next three weeks isn’t just awful but I’m talking historically catastrophic I’m talking 1918 levels of pain for the next month and a half or so until the vaccine comes into play.”

            “I have been tracking exactly what you said very closely John to sort of see where are we in this country as compared to what is widely considered as the worst public health disaster in the history of the world hundred years ago or at least the last few hundred years and … we have better hospitalizations, ICUs, therapeutics, and an ambulance system and despite that, if you look at the numbers, we are tracking just as badly as back then which speaks to the fact that no matter how good we get scientifically and all the wonderful things that medicine can do, despite all that, human behavior is still sabotaging us…”

            “I was looking at the models again last night and the projected peak keeps moving but sometime in January —the issue really is that we may stay there and just plateau at that unacceptably high-level for a long period of time…The exponential growth is too high…90% of hospitals now are at capacity around the country. Where do you go? …if the entire country is on fire what is the escape hatch? It is becoming increasingly hard to find one”

            “I don’t know where this peaks at this point I mean this is starting to defy the models even the aggressive ones in terms of how bad things could get…I don’t know if viewers have noticed but we hardly ever present those worst case models what we are presenting to you is sort of the middle of the road sort of model they could be better if we actually started to employ mask mandates and talk about those five locations restaurants, bars, cafés, hotels, houses of worship for example or it could be a lot worse as well and right now I’m not sure where we’re headed, but it’s very disheartening to hear that they’re still having this party at the White House, not just because of the White House but because then I get 100 emails from people saying hey how bad is it really? having a bunch of relatives over for the holidays will be OK right? That’s what I get all the time and I have to be the guy who says no it’s not and I hate to be the guy that says that, I enjoy a great holiday party as much as the next guy but this is not the year to do that.”

 

Dr. Michael Osterholm, leading epidemiologist, December 3, 2020:

            “Now the actual percentage of deaths as a number of people hospitalized is going to start going up because we can’t provide the same quality of care so you’ve got that factor at the same time you’ve also got the surging number of cases overall and that’s up to us that’s on us you know. We have a lot of power over this virus if we just stop swapping air with our friends, colleagues, and unknowns and if we don’t do that we’ll see the case numbers go up while the quality of medical care will actually go down because of the inability to provide adequately trained healthcare workers that’s the perfect storm and at that point I don’t know what this number could look like. It could obviously grow substantially.”

 

Dr. Robert Redfield, CDC Director, December 2, 2020:

            “December, January, and February are gonna be rough times. I actually believe they’re gonna be the most difficult time in the public health history of this nation, largely because of the stress that it’s gonna put on our health care system.”

 

Dear Students,

It’s been almost six weeks since I’ve written an update, and the reason is I haven’t known how to approach the disaster we’re in, or to really add to what’s on the news. I have never been so proud of medical science or so ashamed of my country.

Yes, it’s been a rolling disaster since March but now it’s a quickly swelling disaster and we have failed in every possible way to do the simplest things we’ve been advised to do all along. They didn’t originate with me of course but as those of you who studied “Disease and Human Behavior” with me last spring, I have been issuing warnings about the new coronavirus since January. I have said the same things over and over again, along with others who know much more than I do about this, and all advice has been ignored.

Why repeat it yet again? Well, if a fraction of people who hear the message heed it, that is a few cases prevented and a few lives saved.

Flu pandemic of 1919 vs COVID-19

If you were in that class, you saw a version of this graph before. It was an old-fashioned looking but perfectly respectable summary of the three waves of mortality in the flu pandemic of 1918-1919, which we studied. What I’ve done here is not an exact comparison, at all. These are mortality rates of major cities around the world. I’m superimposing points and projected points in the U.S. epidemic, which as you know I believe is most accurately drawn from hospitalizations, which you can see in the second chart. What is similar is that the 1918 pandemic started with a very serious wave, or two waves depending how you look at it, followed by the real killer wave, the worldwide tsunami. In the second chart you can see how our hospitalizations nationwide came in two waves, in different parts of the country.

COVID hospitalizations as of 12-4-20

The second chart ends with an exponential rise that has swept past the peaks in the first two waves and is going straight up. (The chart, shown on CNN December 4th, comes from The Covid Tracking Project and is almost identical to the chart shown on the same day in the machine-learning-based model of models that integrates many sources.)

As you know if you’ve read these updates before, I like to present good news and bad news. One part of the problem right now is that the bad news is worse than ever. How do I word things when I’ve given so many warnings before? It’s not that I’ve “cried wolf”—quite the opposite, every warning I’ve issued has tragically proved true.

No, it’s that as a writer I can’t figure out how progress from bad to terrible to horrible to disastrous to catastrophic without sounding like a repetitive jerk. And how am I supposed to find words to say that the next two months will be by far the worst we have had? And that the reason will be the same as it has been all along, or at least since we went from bad to worse back in March: Not the virus, but behavior—which viruses don’t have—human behavior.

Okay, nothing new. Yes, denial has gotten worse. Heroic nurses have described people dying of COVID-19 whose last words were that COVID-19 is a hoax. Trump rallies were held throughout the summer and early fall with near-zero precautions and each one was followed by a sharp spike in cases, roughly a doubling, in the communities where they were held, with hospitalizations and deaths close behind. Failure to follow guidelines caused predictable spikes after the Memorial Day weekend, the July Fourth weekend, the Labor Day weekend, and Halloween.

Oh, did I leave out Thanksgiving? No. We don’t have the data yet. It will come soon, and it will add a big surge of cases to what is already—let’s see, are we at catastrophic yet, or only disastrous? Hmm.

I know, we’re not the only ones. Canada had its Thanksgiving on October 12th, and since Canadians also didn’t follow guidelines, they are in their Thanksgiving surge now. But they never got, and will never get, to the levels we have been brought to by American Exceptionalism. We are the worst in the world. Japan is worried right now, but they have had fewer cases in the whole pandemic than we had yesterday!

What about the good news? I’ll get to it soon, but first I have to explain why good news is bad news. The good news is mainly about vaccines, and in my opinion they are going to be wonderful. Some of you have asked me what I think of them, and my answer is that collectively they represent one of the greatest achievements in the history of science. So how can they be bad news?

They can be bad news if they add to the denial of the pandemic—if they make people think it’s basically over, right when we’re starting the worst months of it—months during which the vaccine will do little or nothing to stop it. If you are reading this, it is overwhelmingly likely that you will not be able to get a vaccine until April, May, or later.

Depending on the models, we are talking about adding between two and three hundred thousand American deaths before that time, perhaps as much as doubling the total we have today. And that doesn’t take into account an unknown but undoubtedly large minority who will refuse the vaccines, or the potential for halting vaccinations in the unlikely event of a vaccine safety disaster. By the way, if any of the three vaccines I describe below were offered to me today, I would take it.

The Good News

  1. On November 9th the Pfizer-BioNTech collaboration on an mRNA vaccine announced completion of their Phase III trials and reported an astounding 95 percent efficacy. The FDA will make a decision on December 10th about approving it, and if they say yes, it will be deployed to the highest-priority populations starting December 15th. (An mRNA vaccine consists of messenger RNA injected with the hope that it will enter cells that read the message, assembling a spike protein of the virus, which provokes your specific immune response.) This vaccine is already approved for use in the UK.
  2. On November 16th Moderna announced that its vaccine (also mRNA) completed Phase III trials with an efficacy of 94.5 percent. The FDA will decide on December 17th whether to approve it, and if the answer is yes it will start shipping on December 22nd.
  3. On November 23rd, the Astrazeneca-Oxford University collaboration completed Phase III trials and announced that its vaccine had on average 70 percent efficacy, easily crossing the threshold for FDA approval (50 percent) despite falling short of the two prior announcements. However, they made a mistake in one arm of their study and only gave half the usual first dose, giving a full dose for the second injection. This arm of the study had an efficacy of 90 percent. More important, their vaccine, unlike the first two, can be stored for 30 days at ordinary refrigerator temperatures. (Their vaccine uses an adenovirus vector genetically engineered to carry the message for a coronavirus spike protein and to be unable to reproduce itself; one possible explanation for the happy dosage mistake is that some people develop immunity to the adenovirus and therefore the booster shot doesn’t work as well—unless your first shot was a half-dose. Needless to say, this is under study.)

The Bad News

  1. Both of the marvelously efficacious mRNA vaccines have to be stored at ultra-low temperatures—the Pfizer at -70°C, the Moderna at -20—until almost ready to go into arms. Now I took a canister of liquid nitrogen (-195) with me to the Kalahari Desert to store blood samples for a study, so the temperatures themselves didn’t faze me. But I had a small number of samples and we need to store 700 million vaccine doses just to cover the US. Nothing remotely resembling the network of special freezers we’ll need exists in our country today.
  2. Aside from the thousands of freezers, an unprecedented distribution system will have to be created almost from scratch. I heard someone from Pfizer say that 20 freezer trucks are ready now to carry the vaccine where it’s needed, but that the eventual number of truckloads would be 40,000. The vaccines have to be shipped in perfect condition, and there has to be someone at the end of each journey qualified to inject it safely.
  3. Remember how many times we heard President Trump say that anyone who wants a COVID-19 test can get one? It wasn’t true then and it isn’t true now, in fact testing capacity is declining when it should be many times what it is today. We will have a new president, one who takes science seriously, but science can only go so far against the formidable engineering, social, and political obstacles (much authority will devolve to the states) to doubly vaccinating 350 million Americans. You have to get the first dose, then come back three or four weeks later for the second, then wait a week for your immune system to really protect you. Varying estimates say 100 million Americans will be vaccinated by anywhere from February to July.
  4. Many, many Americans will refuse to be vaccinated, and it is uncertain whether we will ever have enough vaccine acceptance to achieve herd immunity.

Meanwhile, today is a day of milestones. There were 2,879 deaths yesterday, the highest number ever, expected to reach 3,000 a day soon. More than 100,000 people are currently hospitalized with COVID-19, and hospitals throughout the country are nearing full capacity. It isn’t the number of ICU beds or even any beds. It’s the heroes who stand next to them.

Remember when front-line health care workers left Georgia and other safe places for New York, and then later when New Yorkers returned the favor? Nobody is going to leave anywhere for anywhere because every state will need them—and many more like them—right where they are. Death rates in those hospitals will go up as they are overwhelmed.

Those of you who are pre-med or pre-nursing, remember what you see over the next two months, because it will be catastrophic, and this won’t be your last pandemic. Watch the doctors and nurses and respiratory therapists despairing, even crying every day until they collapse from exhaustion or get the virus themselves, knowing all along that this didn’t have to happen.

Because guess what: We have had since Day 1 measures as effective as many vaccines. Masking. Social distancing. Handwashing. These could have prevented most of the 277,000 deaths we’ve had so far, the untold suffering of the families of those people, and the many, many thousands who thought they had easy cases but will end up paying a physical price throughout their lives.

The same measures can save scores of thousands of lives not lost yet but standing in line for their own coffins as they go to bars, hold parties, and “celebrate” the holidays. This will be the most tragic holiday season in all of American history.

I have never been so proud of medical science or so ashamed of my country.

Mask. Social distance. Wash your hands. This is the vaccine you have had all along, and its efficacy is very very high.

Dr. K

PS: Please don’t rely just on me. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York TimesCoronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. With thanks to Prof. Craig Hadley, I also strongly recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning, which has outperformed most others in its projections.

 

Double Down or Double Deaths

            “I feel great. I feel hopeful today, relieved — I hope this marks the beginning to the end of a very painful time in our history.”

            —Sandra Lindsay, Director of Critical Care Nursing at Long Island Jewish Medical Center, after becoming the first person in New York, possibly in the U.S., to be vaccinated against COVID-19, December 14, 2020

             “It was truly, truly a humbling moment to be able to do that… So, this is the light at the end of the tunnel, and we truly have to be patient in order to make this work we have to make sure that we continue on to follow the guidelines —socially distancing, wearing our mask, washing our hands, and not having large gatherings—following those guidelines along with the vaccine, we can defeat this. This is something that is giving us that huge light at the end of the tunnel. It’s still a long tunnel but again, it’s up to us to do our part to assist in stopping this pandemic. So with those things in place along with the vaccine, it’s a good prognosis for the future… Let science speak for itself.”

       —Dr. Michelle Chester, DNP, director of employee health services at Northwell Health, who injected Ms. Lindsay with the vaccine, interviewed on CNN December 15, 2020

            “This disease is real, it is serious and it is deadly. Wear the mask, socially distance, if not for yourself then for others who may lose a loved one to the disease.”

—Kim Miller of Carbondale, Illinois, in the obituary she wrote for her husband Scott

Dear Students,

Two milestones for our country yesterday: the first people outside of research trials to get a COVID-19 vaccine were inoculated; and we crossed the threshhold of 300,000 deaths from the virus, by far the most of any country in the world. The vaccine will eventually be everywhere, but that death toll is only in America.

The first photo shows Sandra Lindsay (quoted above) being vaccinated by Dr. Michelle Chester (also quoted above) and the second shows Ms. Lindsay applauding as she gets her bandaid. She was one of the very first and possibly the first person in the U.S. to receive any COVID-19 vaccine outside a research trial.

People are understandably excited about the vaccine. For a few days it seemed that all I saw when I turned on the news was freezer trucks leaving Pfizer vaccine factories and distribution centers. You would think they were carrying the secret of life, and in a way they were, for those few who will be vaccinated soon. By next week at this time, trucks will be rolling out with a second very effective mRNA vaccine, from Moderna.

But I couldn’t help think of a different kind of refrigerator truck, the portable morgues that are being brought in to hospitals and coroners’ offices all over the country—and not for the first time—to store the overflow of bodies of people killed by COVID-19. Hundreds of hospitals are at full capacity for those still alive, and a third of U.S. hospitals are almost out of ICU space.

Doctors agree that death rates will go up as health care workers are overwhelmed—they, not ICU beds, are the ultimate bottleneck of care—over the next two to three months. Remember that the small number of front-line heroes being vaccinated this week will not have full immunity until the third week of January. Even according to the Trump administration, always bragging about solving the problem, projects 20 million people will be vaccinated in December, and another 20-25 million in January. That’s the first dose; 3-4 weeks later, the second dose, and then a week more for full immunity.

There are 350 million people in the U.S. We add roughly 200,000 cases and more than 2000 deaths a day, with deaths lagging by about 3 weeks. You do the math. Vaccines will have no impact on the next 60 days’ deaths (adding 120,000) and little impact in the next 60 after that. Community spread will continue up to and beyond April 1st, when deaths are projected to pass 500,000, or 600,000 with relaxation of mandates.

But you know of course what can slow the spread right now, today? Masking, social distancing, avoiding gatherings, and proper hand washing. What are the chances that enough Americans will take these simple measures during the holiday season? Close to zero, even though they would save scores of thousands.

In the past nine months, Americans have chosen the worst kind of “social Darwinism” which is contrary to Darwin’s own beliefs. We have chosen to allow the virus to kill off certain groups of people we evidently consider expendable: the old, the sick, the obese, and people whose skin is not white. And now we are cheering and celebrating the deployment of vaccines that will not make a significant dent in community spread for months, and will not stop the U.S. epidemic until we have doubled the number of deaths.

The choice is clear, as it has been all along, except now we have the worst two months of the pandemic right in front of us. We can either double down on precautions or double down on deaths. Remember that young people will be among those killed. And a much larger number of people young today will live out their lives getting reminded every day of the permanent damage the virus did to their bodies.

Celebrate the vaccines, sure, but bear in mind that they will not make a real dent for a long time. Other preventive measures will make a great difference now.

Enjoy the holidays safely, so we can truly have a blowout celebration next year. I’ll see you in January, unfortunately still on Zoom.

Stay safe,

Dr. K

 

Shiny Object

            “I think the bottom line here is that the interventions that are needed to prevent the spread, regardless of which variant it is, are the same, and I think that’s key and that’s where we should be focusing. While scientists are still doing the lab experiments to figure out what are the implications of this new variant—Does it really enhance transmissability as has been suggested? Does it really prevent antibodies from binding to the virus? Will it have any implications for vaccine efficacy?—these are still questions that scientists are hopefully going to answer in the coming days and weeks.” Dr. Soumya Swaminathan, MD, World Health Organization Chief Scientist, on Bloomberg Television, December 21, 2020

            “I think it’s pretty likely that social distancing and wearing masks will be helpful for this period. I mean, [the new strain] doesn’t have magical powers. If people aren’t near each other, it can’t spread. So this is a moment when you have to really realize that it’s both the vaccine and what we do that drives the population rate down, and as that comes down, we get to do more things in our lives. So, it’s, you know, a real sign that it’s not enough just to wait for the vaccine.” Dr. Joshua Sharfstein, MD, Johns Hopkins Vice Dean for Public Health Practice, on Bloomberg Television, December 21, 2020.

            “We’ve learned a lot in the last year about how to treat patients. We have therapies, modalities such as steroids, which reduce the risk of mortality 20, 30 percent. So we don’t have any game changers or homeruns on the forefront of therapeutics at this point. And so we’re gonna have to rely on public health, you know, sound public health prevention to get over this period. It’s gonna be a difficult next several months during these winter months as this surge is occurring, not only in the United States but in many parts of the world.” Dr Albert Ko, Professor of Epidemiology and Medicine and Chief of Medicine, Yale Medical School, on Bloomberg Television, December 24, 2020

Credit: Andrzej Wojcicki

Dear Students,

I’m going to keep this short, because of the holidays—the quotes above say it all—but also because of the holidays, I can’t not do it. There is too much danger around us right now.

A new type of SARS-CoV2 has been found in southern England. It is referred to by the British scientists as a VUI—Variant Under Investigation. There is limited evidence that it may be more transmissable, possibly 70 percent more, than previously identified variants. It has 23 mutations that have been seen in other variants, but not together. Some experts are skeptical that higher transmissibility has been proved.

Sealing the UK off from the rest of the world seems simply too late to do effectively now. The most likely reason it was found in the UK is that the UK does more viral genetic sequencing than any other country, far more than we do. Especially if it is indeed more transmissable, it is probably already in many other countries, including ours.

What can you do about it? What I hope you have been doing all along: masking, social distancing, handwashing, and avoiding social gatherings, including small ones that include people from two or three households. If you have been slacking off, stop slacking off and double down on all precautions. For our country, this is the worst time so far, by far.

The photo shows a shiny object that is distracting many people. Forget about those who are fool enough to reject the vaccine. I’m talking about those who feel complacent because they think the vaccine has already saved us. Not even close. That’s the point of the hourglass in the syringe. For each one of us who gets a first dose, the jab comes with a four to five week delay until protection.

For the country as a whole, it comes with a delay of six to eight months. That means we will not only not have protection as a nation, we will actually be in worse shape for the next two to three months than we have ever been before, or for that matter worse than any nation in the world has ever been before.

Because you see, although the vaccine’s scientific development has been Operation Warp Speed, the distribution will be Operation Snail’s Pace. I heard someone on TV brag today that we’ve vaccinated a million people already! In just ten days!

Good luck getting back to normal at that rate. Of course, it will increase. There will be millions by New Year’s Eve. But we need scores of millions right now, not millions, and we will need hundreds of millions to get back to normal—July 1st, if everything goes according to the non-plan. If it doesn’t…

Yes, the non-plan. There never was a plan for distribution, and there isn’t one now, not a national plan. This past week the White House finally got an order in for a decent number of vaccine doses. Manufacturing will start on that order, and…and…

If there had been a plan, especially if the Defense Production Act had been invoked to start producing the number needed, as could have happened long before approval—it was just a matter of money to make and store them—then we would be deploying scores of millions of doses now.

But there was no plan and the DPA was not invoked. So we face the worst now, for two to three months, and a pandemic that lingers, worsening until spring, then tapering slowly until summer.

Don’t get me wrong, the vaccines are great. They are very safe and highly effective. I would take either of the mRNA vaccines (Pfizer and Moderna) already deployed right now, today, if I could. In fact I would take my chances with either of the adenovirus vaccines (Astrazeneca and Johnson & Johnson) that haven’t even finished clinical trials.

The science behind them did not begin this year, it began with SARS-1 in the early 2000s. It’s being finished this year. What’s not going to be finished until the middle of 2021 at best is delivering this great science into the arms of the American people, and making our lives whole and normal again.

So it’s still up to you. Protect yourself and your loved ones. Protect neighbors and strangers too. Don’t be distracted by the shiny object in the photo. It won’t bring normality any time soon. It won’t even bring safety. Only you can do that.

Have a safe and happy holiday season by not trying to have a normal one. Live, and help others live, to celebrate normally next year and for many years after.

Be wise and stay safe,

Dr. K

 

350,000

“The vaccine rollout has been embarrassingly slow. I’m having patients call daily, anxious, fearful that they won’t get vaccinated, and as you know we’re losing thousands of lives a day. I think what needs to happen is a better communication between the federal government and our states; we need coordination of delivery; and we need more funding to get the shots out of the refrigerator and into people’s arms.” Dr. Lucy McBride, internal medicine physician, on Bloomberg TV, January 4, 2020

“The challenge we have right now should’ve been expected. I’ve been talking about the last mile and the last inch for the better part of several months. What we did is we invested a great deal of money in the basic research and development, the licensing and approval, the actual manufacture of the vaccines, but we we forgot about what will it take to actually get this vaccine in to peoples arms… Long-term care facilities are being handled by a private pharmaceutical or pharmacy company and they were not really ready to go. Healthcare workers have been slow in getting the vaccine to because they’re also in the middle of a crisis, and so to try to do both vaccination and care for all these patients has been a challenge.” Dr. Michael Osterholm, epidemiologist, on Bloomberg TV, January 5, 2021

“Come back and look with me. I have no beds. I have nowhere to put you.” Jenna Rasnic, Methodist Medical Center Emergency Room Nurse, USA Today video, January 4, 2021

 

Dear Students,

Happy New Year, sort of. If you’ve been following the news at all you know that we are in the worst phase of the American pandemic, getting worse every day. Hospitals are overwhelmed (in California, Mississippi, Georgia, etc., etc.) and the Christmas week (not to mention New Year’s Eve) surges have not even darkened their doors yet. Patients are being cared for in chapels and gift shops. Triage committees have been implemented in many hospitals so that patients can be turned away because others have a better chance of recovery. Naval hospital ships are being begged for in some cities. National guard troops have been mobilized to store the cascade of bodies needing refrigeration after death.

I won’t tell you in my own chosen words how the vaccine rollout is going, but it rhymes with “duster truck.” Also, with “muster luck.” Luck is something we have only really mustered in one domain since this time last year: the beautiful science of the vaccines. And that wasn’t luck anyway, it was earned by brilliant scientists. Apart from heroic clinical care, it’s the only thing we have done right.

If you want to understand why there are tens of millions of lifesaving vaccine doses sitting in freezers right now, why the government’s predicted number of actual vaccinations—20 million by the end of 2020—turned out to be a pathetic 2 or 3 million, all you have to do is remember the year that was: how carefully we handled containment in the early weeks, how strongly and promptly we stepped up production of personal protective equipment, how well we did testing and contact tracing throughout, how responsibly we followed the simplest public health measures, how effectively we communicated the dangers, and how cleverly we avoided and flattened the predicted and avoidable monstrosity of the fall and winter surge.

Oh wait, I forgot. We didn’t do any of those things.

Bad luck, you could say, I suppose, except it wasn’t. It was failure. Failure after failure after failure. Abject, shameful, humiliating, lazy, reckless, titanic failure. Failure on a scale and in a manner unprecedented in our nation’s history. Failure of thought. Failure of planning. Failure of ethics. Failure of patriotism. Failure of equality. Failure of caring. Failure of love.

For a while you could say we were lucky in one other way. We had a corps of nurses, doctors, and others on the front lines in ERs and ICUs who never flagged or shirked their duty even when they were crying in their cars on the way to and from work, terrified of infecting themselves and their families yet going back and back for more. They even worked out a few inventive ways of lowering our chances of death once we enter the hospital.

And how do we reward them for conspicuous bravery, compassion, brilliance, and patriotism under fire?

We reward them by grabbing them by their hospital gowns, slamming them against the ICU wall, and punching them until they fall down. We reward them by slobbering and spitting more and more virus in their beaten faces. We reward them by kicking their wounded bodies when they’re down. Those of you aiming for clinical careers take note.

And now, with the new holiday surges about to come, we will give them their ultimate reward: we will kill them with our virus. We will kick them until they are dead. And then the National Guard can come and store their bodies alongside ours in the overflow refrigerator trailers. Maybe trailer parks can double as makeshift cemeteries.

Some of you have thought that I wrote angrily before. I guess I have reached a new level of frustration, anger, and grief. To trash the beautiful hopes raised by the vaccines by having no plan to distribute them, to leave them to spoil on shelves while the hospitalizations and deaths mount and mount, is not only a last straw, not only an insult to the genius of those scientists who invented, developed, and tested them in record time and with near-perfect precision, it is an insult to humanity. Yours. Mine. Everyone’s.

Someone said that the mark of a civilized person is to be able to look at a page of numbers and weep. We are learning, more every day, to look at a graph and weep—and yet I don’t believe for one minute that we are civilized.

The Year of Colossal Failure will now be extended, not for weeks but for months. September is now an optimistic view of when we are done with this. Welcome to 2021.

Dr. K

PS: Please don’t rely just on me. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York Times Coronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. I also recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning. For an antidote to my gloom, check out the updates of Dr. Lucy McBride, who doesn’t see different facts but accentuates the positive. For an up-to-date account of the clinical facts by the marvelous front-line doc Daniel Griffin, listen to TWiV episode 701, a marvelously clear step-by-step from exposure to recovery in 39 minutes.

 

One Marshmallow

       “These plans are so unrealistically optimistic that they border on delusional and could lead to outbreaks of Covid-19 among students, faculty and staff.”

       Laurence Steinberg, The New York Times, June 15, 2020, referring to proposed college reopenings

Dear Students,

A few weeks ago, New York Times columnist Paul Krugman (winner of the Nobel Memorial Prize in Economics) wrote a column called “America Fails the Marshmallow Test.” This is a reference to a famous 1960s psychological experiment, in which a marshmallow (or cookie, or piece of candy) is placed in front of a young child, who is told she can eat that marshmallow now, but if she waits 15 minutes, she’ll get two instead of one. Studies stemming from this experiment became a cottage industry, and among the claims made by those involved, being able to postpone gratification for greater gain was a fundamental character trait in the two-marshmallow kids that predicted much about their later success. They were said to have better “executive function,” meaning their frontal lobes were better able to suppress the impulse to get one marshmallow now in order to get two later.

Krugman understood that a 2018 study apparently failed to replicate the marshmallow study, but wanted to use the metaphor for our country’s inability to wait a little longer before lifting social distancing restrictions. Actually, the marshmallow study was not debunked by the 2018 replication, which has been criticized for controlling away some variables (like early cognitive ability) that are intrinsic to what the marshmallow test tries to measure. Also, the replication did find that the test predicted some characteristics of adolescents, just not as much as earlier studies claimed. The critics of the critics—the marshmallow defenders—called their paper “Good Things Come to Those Who Wait,” with the running head, “Delaying Gratification Matters.”

Speaking of delaying gratification, it’s not just five-year-olds who are not good at it. Adolescents are not good at it either.

I know you don’t like to think of yourselves as adolescents, but the fact is that brain development is not complete until age 25 or so, and the main part of the brain that keeps developing is precisely those frontal lobes that are involved in executive functions: planning, reasoning, analyzing, and yes, postponing gratification. This period of extended frontal cortex development has been called youth, pre-adulthood, or emerging adulthood.

Psychologist Laurence Steinberg is the world’s leading authority on brain development in adolescence and beyond, especially in relation to executive functions. He has co-authored papers in law and psychology journals with titles like “Blaming Youth,” “Young Adulthood as a Transitional Legal Category,” and “Less Guilty by Reason of Adolescence.” He has tried to protect young people from the most severe punishments for acts which they literally did not have the brainpower to control.

Now Steinberg has weighed in on a question many of you have asked me about: College reopenings in August, including ours. Steinberg, who has spent his life as a college professor researching the young, wrote an essay two weeks ago called, “Expecting Students to Play It Safe if Colleges Reopen Is a Fantasy.”

Based on his 40 years of research on young people, he writes, “Most types of risky behavior — reckless driving, criminal activity, fighting, unsafe sex and binge drinking, to name just a few — peak during the late teens and early 20s. Moreover, interventions designed to diminish risk-taking in this age group, such as attempts to squelch binge drinking on campus, have an underwhelming track record. There is little reason to think that the approaches proposed to mitigate transmission of the coronavirus among college students will fare any better.”

The evidence on the other side is very strong. Steinberg and his colleagues recently completed “a study of more than 5,000 people between the ages of 10 and 30 from 11 different countries (including both Western and non-Western ones)… Consistent with large-scale epidemiological studies, we found a peak in risk-taking somewhere between age 20 and 24 in virtually every country.” There are three straightforward reasons.

Youth (not just adolescence) is a time of 1. heightened risk taking, and 2. poor self-regulation in all cultures. These two psychological features of young adulthood are in turn explained by 3. easier activation of the brain’s reward circuits, made even worse under conditions of emotional arousal and in the presence of peers.

To Laurence Steinberg, who probably knows more about not only the psychology but the neurobiology of young people than anyone else alive, college reopenings will be a “perfect storm” for viral spread. College reopenings are also being criticized by moral philosophers, college presidents, lawyers, and, of course, some epidemiologists. Dr. Anthony Fauci, our nation’s leading expert on the pandemic, says the matter is “complicated” and will depend on what region of the country you’re talking about.

It’s not always a bad idea to take a reward now even though it may be smaller. That’s why we have the proverb, “A bird in the hand is worth two in the bush.” Young people are designed to take risks for short-term rewards because that is how they test themselves, learn about life, find mates, make friends, and generally position themselves among their peers. Up to a point you have to take risks.

But we are not talking about a torn ligament, a bad hangover, or a brush with gonorrhea. This is a situation that has never before existed in my lifetime, not even during the early years of HIV/AIDS. I have repeatedly emphasized to you that the unknowns in relation to this pandemic are greater than the knowns, and that remains true. Right now cases are on the rise in the nation, in most states, and in almost every major city in the southern half of the country from Los Angeles to Miami.

The entire state university system of California will be 100 percent online. If you were in college in a rural area of Massachusetts or New York, you would probably be safe attending live, but you are not in one of those colleges. The situation in Atlanta is uncertain, but Emory says it is taking precautions that will make reopening safe.

Last week I said that case counts are like lightning, and that I was waiting for the thunder—hospitalizations and deaths. Being no longer young, I am able to wait. Some leaders claim that the only reason we have more cases is that we have more testing. I think this is wrong, but I don’t want to argue about it because I can wait. Others say we really do have more cases but because the age of infection is on average much lower than it was a month or two ago, we will never see the hospitalizations or deaths go up by much.

Lightning is flashing all across the southern United States, and some say it is starting fires that will be impossible to control and that will in the end kill many. State after state in the south are backtracking on their openings. But the states don’t really control behavior, especially the behavior of the young.

The July 4th weekend is coming, and millions of young people will take the one marshmallow. What will you do?

Dr. K

New Sheriff, New Bad Guys

      “We shall fight on the beaches, we shall fight on the landing grounds, we shall fight in the fields and in the streets, we shall fight in the hills; we shall never surrender.” Prime Minister Winston Churchill, House of Commons, June 4, 1940

     “C’mon man, gimme a break!” President Joe Biden, January 21, 2021, answering a reporter who asked if a million vaccinations a day was enough

Dear Students,

Don’t get me wrong. I love Joe Biden. I supported him when most of my family and friends supported Elizabeth Warren—who by the way was the smartest person running for president, and had policy views most similar to mine—or Bernie, or others. Also, I didn’t think anyone as old as me should be president again. Yet I supported Biden because I was fairly sure that he had the best chance of winning, and because I was completely sure that he is an exceptionally good man. Although I did not say this to many people, I thought that he might be a great president.

Also, he is off to a good start. The new sheriff is laying down the law—on racism, LGBTQ rights, economic rescue, environmental protection, masking, social distancing, and vaccinations. But as far as the virus goes, he does not get a break from me, and no, it is not nearly enough.

Dr. Peter Hotez, a distinguished physician-virologist who is probably the most knowledgeable person about the pandemic after Dr. Fauci—but who can speak more freely than Fauci even now—wrote an op-ed piece in the Washington Post on January 26th in which he described the new variants of the virus as a “looming catastrophe” that will bring us to 600,000 deaths by May. We need to deliver 500 million doses of vaccines—into Americans’ arms—to end community transmission. Do we want to wait 500 days? By that time the new variants will have run all over us. We need to do it by summer. Which is why Dr. Hotez is calling for 3 million vaccinations a day.

This means that we need more than two vaccines; a vast and rapid (warp-speed?) expansion of vaccination centers beyond those already planned; unprecedented invocation of the Defense Production Act; imaginative use of the armed forces, even beyond the National Guard; and innovative use of syringes and other equipment to minimize vaccine waste. A good account of the current vaccine development situation in terms of science is here, but we need more than science, we need wartime logistics.

We also need a new level of seriousness about masks, social distancing, and handwashing. If we don’t ramp up our use of these measures, we will surely face more lockdowns, with all the associated economic, social, family, educational, and psychological pain.

If you have studied with me, you recognize that we are in an evolutionary arms race with this virus. All infectious agents adapt and evolve. They evade our defenses—both vaccines and treatments. That’s why after almost four decades we don’t have a vaccine against HIV, which evolves even within one person. That’s why we need a new flu vaccine every year. That’s why every year, thousands die of TB and malaria because they are infected by strains that resist all known treatments.

If we don’t (culturally) adapt and evolve in the face of this new virus—or should I say these new viruses?—we will lose, and as always, black, brown, and Native American people will lose most. We will not win this arms race, this by far most deadly of all our wars, by asking for “a break.” We will only win by fighting the virus every hour of every day, in every place, in every way.

Good News

  1. The new sheriff is really, really different from the old one. His deputies can shoot straight and they know how to round up bad guys—bad viruses. The heads of the CDC, FDA, HHS and many other agencies responsible for fighting disease are superb people, not third-raters and sycophants like their predecessors; they are already speaking directly and frequently to the American people, without fear of censorship for delivering scientific truth. For the first time there is a national plan, and it is a fairly good plan. With it, we are building a shield against the virus that we never had before.
  2. There has been a significant decline in the past couple of weeks in the number of US cases and hospitalizations but not yet deaths, probably related to the end of the big holiday surge.
  3. The Pfizer and Moderna mRNA vaccines are working safely, and pretty soon a few million Americans will have approximately 95 percent protection (two weeks or so after their second dose). Preliminary data suggest that protection levels could be even higher in the community than they were in clinical trials.
  4. The Janssen/Johnson & Johnson (J&J) vaccine will likely be approved (like the first two) for emergency use in the U.S., within a couple of weeks. Despite being less protective than its predecessors, it is more effective than the seasonal flu vaccine and easily passes the threshold of 50 percent protection set by health authorities. It hides the DNA—the gene—of a SARS-CoV-2 spike protein inside the Trojan horse of a cold virus disabled from reproducing. It has tremendous advantages: first, it only requires one shot; second, it does not require any specialized freezing or cooling equipment (DNA being much more stable than mRNA). These advantages will make it literally a lifesaver in rural America and in the developing world.
  5. The Oxford/AstraZeneca vaccine, despite some stumbles in the Phase III trials, is being used in the UK and was just approved by the European Union. It requires two doses but no special freezers, and will probably be added to the US vaccine arsenal in April. It is similar in principle to the J&J but uses a non-reproducing chimp adenovirus (instead of a human one) as the Trojan horse. The DNA is stable at higher temperatures, but it is still being worked out what the ideal doses would be.
  6. A monoclonal antibody drug (bamlanivimab, Eli Lilly) has shown 80 percent effectiveness in preventing infection in a randomized controlled trial in nursing home patients, and even greater effectiveness against deaths. This would have been tremendously important a few months ago, before we had vaccines, but now that we do, it’s not clear how the antibodies will be used—especially since they may interfere with vaccine effects.

Bad News

  1. The big bad news, and it is really bad, is that the virus has evolved new variants—new bad guys that will make the new sheriff’s job much harder. Of course, it has been evolving all along. A new paper, “Emergence of a Highly Fit SARS-CoV-2 Variant,” traces the first big leap the virus took last spring. As you know, “highly fit” in this context means spreading faster for more reproductive success. That first mutation was a single base change known as D614G that emerged in Southern Europe and by June was the dominant strain in the world.
  2. Viral evolution continued. In December a new “variant of concern” (B.1.1.7) was found in Southern England that contained multiple mutations and was determined to spread much faster and cause more severe disease. The mutations make it easier for a spike protein on the virus to combine with ACE2 receptors on human cells to gain entry. Hospitalizations doubled in the UK as the new variant became dominant there. More replication, more fitness, more dominance. It has been found in several US states and is predicted to be the dominant strain here by March. Fortunately, it does not evade already existing vaccines.
  3. A new South African variant (B.1.351) with different mutations of the spike protein—one of the mutations is on the presenting tip of the spike protein—is spreading rapidly and may soon threaten my old friends in Botswana. Two cases were found in South Carolina. Dr. Brannon Traxler, Interim Public Health director for the state, announced that they are independent of each other and have no travel history. She added cogently, “We know that viruses mutate to live and live to mutate.” Another independent case was found in Maryland. Given that we only sequence half of one percent of the virus samples taken in this country, it may already be everywhere. Like the English variant, it is more contagious and produces more severe cases, but unlike the English one, it also appears to be less responsive to existing vaccines.
  4. A new Brazilian variant (P.1) is worrying scientists. It is spreading explosively there and has been found in Minnesota. It may infect people who have had the disease before. It may or may not turn out to be implicated in the newly announced tragic COVID-19 deaths of nine children in the remote Amazonian villages of the indigenous Yanomami.
  5. There is no chance that one million vaccinations a day in the United States will stay ahead of the coming invasion of these new viral variants. The best, if not the only chance, is a great intensification of other preventive measures, the same that have been recommended all along. Unfortunately the behavioral trends seem to be going in the opposite direction.

On “Meet the Press” yesterday, top epidemiologist Michael Osterholm said, “The surge that is likely to occur with this new variant from England, is going to happen in the next 6 to 14 weeks. And if we see that happen—which my 45 years in the trenches tell us we will—we are going to see something like we have not seen yet in this country… Imagine where we are, Chuck, right now. You and I are sitting on this beach where it’s seventy degrees, perfectly blue skies, gentle breeze, but I see that hurricane, Category 5 or higher, 450 miles offshore. And telling people to evacuate on that nice blue-sky day is going to be hard. But I can also tell you that hurricane’s coming.”

Dr. Nahib Bhadelia of Boston University’s School of Medicine, asked to comment on Osterholm’s metaphor, said we are in  “the eye of the storm,” not sitting on the beach with the storm hundreds of miles out. She means that the worst part of the storm so far—December and January—is deceptively slacking off. As the hurricane moves over us, the lull of the eye passes, and we get slammed with another monstrous storm surge in March and April.

Dr. Osterholm went on to say that we need “an audible”—American-footballese for a last-minute yell on the field that changes the plan. He thinks we need to get as many people as possible vaccinated once right now, and forget about the second dose until later. There is controversy about this, but Osterholm is really smart.

Recall what Dr. Traxler, South Carolina surgeon-turned-health official, said when she became the first American to announce the South African strain: “We know that viruses mutate to live and live to mutate.” She continued, ““That’s why it’s critical that we all continue to do our part by taking small actions that make a big difference. These include wearing our masks, staying at least six feet apart from others, avoiding large crowds, washing our hands, getting tested often, and when we can, getting vaccinated. These are the best tools for preventing the spread of the virus, no matter the strain.”

On December 15th, when I posted “Double Down or Double Deaths,” we had just crossed 300,000, but we were having the first vaccinations and hope was in the air. I said we could go to 600,000 if we don’t change our behavior. The IHME model now projects 582 thousand by May , 600 thousand taking the new variants into account. That’s the doubling. Considering we’re at 440,000 today, it’s not a stretch.  Depending on what we do and what the variants do, we could be anywhere between 600 and 2,400 daily deaths in May. The difference would be the equivalent of two 9-11’s every two days. And of course May will not be the end.

The new shield we got on January 20th is not nearly big enough or thick enough. And the new variants teach us that unless we think about protecting the developing world, protecting the whole world, which is the virus’s continuous playground, our shield will be full of holes.

Are you tired of the precautions? I am too. I want to hug my children and grandchildren so bad it hurts (and I don’t care that it’s ungrammatical). I want to see live theater. I want to eat out with my wife in any sort of restaurant, even McDonalds. I want to smile at people and see them smile back. I am tired of restricting myself for the benefit of myself, my community, and my country. I am, to use an  expression my mother might use, bone-tired. But I am not yet dead-tired. I will be dead-tired if and when the virus kills me.

And oh, by the way. In case you get to whisper in President Biden’s ear, give him this message from me: Mr. President, Sir, with all due respect, the next time a reporter asks you if a million vaccines a day is enough, do what you always said you would do: Level with us. Don’t say, ‘Gimme a break man.’ Say, ‘No, it’s not enough. We need three million a day at least, and  I promise you I will not rest until we have that. We are at war. We will fight this virus in the clinics and in the stadiums, we will fight in the pharmacies and supermarkets, we will fight on street corners and parking lots, we will fight in convention centers and on fair grounds, we will fight in the poor dense cities and in the bucolic countryside, we will fight with syringes and tests and masks and distancing; we will never surrender.’

Stay safe,

Dr. K

“Baby, There’s COVID Outside”

            “Dr Chris Murray from the IHME told Anderson this earlier tonight, they’re expecting over 100,000 additional deaths between now and June … they don’t think that the US will reach herd immunity before next winter. I mean that’s a pretty scary proposition—what do you think?” 

            “I think that Dr. Murray and his colleagues are probably right… It’s going to take us quite some time to get…enough supply. Hopefully we’ll reach that by by mid-summer but…we really need the vast majority of adult Americans to take the vaccine, and I’m afraid that because of the pandemic of disinformation, it’s going to be really difficult to do that, and so I’m hopeful that we can do this by winter and have a normal Christmas and New Year’s, but it’s going to take a lot of hard work for us to get there, and the variants can really throw a wrench into the works… I really do worry about the variants, because if you have something that’s a lot more transmissible then it’s not just a matter of linear spread; so something that’s 50% more transmissible, you’re not going to get 50% more infections, you’ll get many many many times more infections… I also worry about variants that potentially could be less effective with the vaccines that we have and we may always be happy to play catch-up so we vaccinate everyone, but then there are variants, and then we have to get boosters to target those variants. So we could always be trying to play catch-up here, and that is a big problem.” Dr Leana Wen, with Don Lemon, CNN, 2-19-21

            “The virus and the pandemic as we know it is not the virus and the pandemic that we face right now… This virus is changing and it is changing rapidly. There about 4000 different variants… To find a variant you have to genetically sequence, it requires skill, immense computing power, and frankly not many countries are doing that… Those three main strains [UK, South Africa, Brazil/Japan] are out there and they are improvements from the original virus, because that’s the way evolution works. When there is even a tiny advantage that advantage is pushed along through natural selection at an enormously rapid rate because evolution in viruses happens very very quickly… I’ve been following the story of one particular intensive care nurse who was quite optimistic because she had gotten her vaccine and then her COVID ward suddenly changed when these mutant strains arrived:”

            “We’ve seen patients now with absolutely no past medical history, not overweight, runners, people who go to the gym, people in their 40s, and these patients are dying.”

            “What would you say to Americans who might not have woken up yet to the fact that this is coming?” 

            “If you love your family, if you love the people you know, wear a mask, stay indoors, wash your hands, be careful, just realize that this will kill.” Richard Engel with a UK intensive care nurse, MSNBC, 2-21-21

Dear Students:

This is much my favorite of several parodies of the old song, “Baby It’s Cold Outside,” making the cloud rounds since Christmas. I know, it’s cold outside too. Colder than it has ever been in, for instance, Texas, where due to the incompetence of state leadership, at least 32 people have died from the winter storm—of at least 69 nationally—as of yesterday.

My heart goes out to the victims, their families, and the millions of others who suffered from no heat in freezing cold—some made fires from their furniture—and no water due to ice-burst pipes. But consider.

The 7-day moving average of daily deaths in Texas from COVID-19 was 119 on Saturday. So, despite the lowest death rates since November, during the week of the storm the virus killed over 800 people, or around 25 times as many as the cold did. But the storm news thoroughly dominated the air waves all week, with virus stories and analyses relegated to short segments late in the hour.

Nationwide we are under 2,000 deaths a day, down from 4,000 in mid-January (see the chart). This is terrifically good news. But we are still far above the summer peak and only around the immensely disturbing first peak of last spring. That’s with all the advances in treatment and two months of vaccine roll-outs.

Hospitalizations have dropped similarly, a tremendous boon to our frontline healthcare heroes, and cases have dropped even more. But all are still at or above previous peaks. We just crossed the nauseating milestone of half a million deaths.

Baby, it’s COVID outside.

Good News

  1. New cases in the US have dropped 70 percent from the winter peak, hospitalizations and deaths have been halved. This is most likely due overwhelmingly to the pass-through of the holiday-period recklessness and the resulting unprecedented surge. Improved behavior, partial immunity due to prior infection and (to a very small extent) vaccination have probably helped.
  2. The vaccine roll-out continues with great fanfare but at a slow pace. We have reached over 60 million vaccinations, mostly first dose, and that is increasing at 1.6 million a day. So far this is overwhelmingly the Pfizer and Moderna mRNA vaccines, but the Johnson & Johnson single-dose one is on the verge of Emergency Use Approval, with more to come.
  3. A study in Israel, where vaccination rates beat the world, shows that a first dose of Pfizer vaccine affords 85 percent protection between 15 and 28 days out. This is far better than anyone expected. Another Israeli study showed that a double dose prevents transmission as well as disease, at a rate of 89 percent; this was a big question mark until now.
  4. Treatment advances continue, including monoclonal antibodies for early-stage patients to keep them out of the hospital, and late stage tocilizumab, an interleukin-6 (IL-6) inhibitor, given after or with the steroid dexamethasone. Immune system interventions like these, science fiction a few decades ago, are working. Early anticoagulant (blood thinner) treatments and vitamin D supplements also make a difference.
  5. The new administration in Washington has set a new tone. Masks are cool and people from the top down are modeling their use. Social distancing, handwashing, and other preventive measures are mentioned frequently. The stupid culture wars over prevention are not done, but the federal government is on the side of science.

Bad News

  1. SARS-CoV-2 is evolving fast. The 4,000 variants mentioned above are of uncertain importance, but some could change the game, and not enough people in government or news outlets are talking about them. The UK variant spread like wildfire there and doubled hospitalizations almost overnight. Cases of it are doubling every 10 days here and it will be the dominant US strain by March. Cases of the South African and Brazil/Japan strains are here. The first is resistant to some vaccines and the second is implicated in a new epidemic that engulfed Manaus, an Amazonian city of 2 million.
  2. Dr. Peter Hotez, probably the nation’s leading expert on vaccine development, says we need 3 million doses in arms per day, almost twice what we have now, and there are no plans announced to get to that number. Dr. Michael Osterholm gave up his own second dose because he believes triage requires that we (like the UK) choose to vaccinate twice as many people once before we give second doses (see #3 above).
  3. President Biden has promised to “level” with us, and, like FDR, to give it to us “straight from the shoulder.” But if he did that, he would not talk about 600 million doses by mid-summer as if it were adequate. He would apologize and pledge more. And he would certainly not, as I have heard him, blame his predecessor, which is uncomfortably reminiscent of what his predecessor did.
  4. Israel, the UK, and even the United Arab Emirates show that vaccinations can move much faster than they are moving here now. The UK has been on lockdown for many weeks and will reopen only slowly as conditions allow in March. Bhutan, Rwanda, and Senegal have done far better than we have in controlling this pandemic. Are we still too proud to learn the lessons all those countries and more have to teach us?
  5. The issue of school reopenings has been handled by the new CDC Director, Dr. Rochelle Walensky, almost as bumblingly as by her predecessor. On Sunday the 14th CNN’s Jake Tapper asked her to defend her new guidelines. She tripped all over herself. She said (for example) that community transmission has to be controlled where the school is. Tapper pointed out that 99 percent of US schoolkids live in red zones. No answer. This was without noting that thousands of schools would go bankrupt if they met the guidelines for cleaning, ventilation, and so on. Biden’s White House did not back her up. Of course kids need school, but the new CDC is still being disingenuous. Vaccinate the teachers, janitors, and food workers.

Speaking of kids, I reached the two-week anniversary of my second Pfizer dose on Friday, and on Saturday I snuggled with my grandkids while reading to them for the first time in almost a year. We were outside and I was still masked, but it was a great feeling. One of the new studies mentioned above told me I would be unlikely to carry it asymptomatically to them

As I said to some of you yesterday, I wish I could tell you to party. You have as much right to party as I have to hug my grandchildren. But if you do it now, you will join the ranks of the foolish who infect themselves and others.

This is not over. Not all 4,000 viral mutants are “variants of concern,” most are biologically silent, but some make the disease more likely to transmit, more deadly, or more resistant to vaccines and our own immunity. I was happy to hear cable news talk about natural selection, but I am not happy with the results of that selection. And we are underestimating it because we do so pathetically little viral genome sequencing.

Dr. Michael Osterholm said Friday on PBS that we are in the calm before the storm, and that a new surge caused by the UK variant (B.1.1.7, which current vaccines do prevent) is inevitable. Based on the UK’s own experience, we could see 195,000 hospitalizations a day, compared to the 130,000 a day that overwhelmed our hospitals in January—the surge that among other things required a fleet of refrigerated trucks to store the bodies.

Dr. Fauci said yesterday we may still be wearing masks in 2022—some degree of normality by the end of ’21, but not without masks and other precautions between now and then. Today he said, “This is a common enemy. We’ve all got to pitch in. We’re in some good shape now with the vaccines, but it’s going to be a race against the infections that keep coming.”

Dr. Tom Gillespie, of Emory’s Environmental Sciences Department, was quoted in yesterday’s New York Times (“And Then the Gorillas Started Coughing”), commenting on two San Diego Zoo gorillas that contracted SARS-CoV-2—which they could only have gotten from humans—warning that apes and other infectable species could become a reservoir that preserves the virus after the pandemic and circulates it back to us. Viruses of many kinds are a long-term threat.

Mohamed El-Arian, financial advisor and president of Queen’s College, Cambridge, said today we were in a two-horse race, vaccines against the virus, but that now it’s a three-horse race, with the third horse being the new variants, and if that horse comes up fast, we could be in bad trouble again. We only beat the third horse with the precautionary measures we have been advised to take all along.

As you know, Emory itself, which has done very well all along, has had an unprecedented burst of cases among students in just the past week, for unknown reasons.

Parts of the country are in the deep freeze, but baby it’s covid outside. Stay safe,

Dr. K

PS: Please don’t rely just on me. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York Times Coronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. I also recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning. For an antidote to my gloom, check out the updates of Dr. Lucy McBride, who doesn’t see different facts but accentuates the positive.

Arms Race

      “Please hear me clearly: at this level of cases with variants spreading, we stand to completely lose the hard-earned ground we have gained. Now is not the time to relax.” Dr. Rochelle Walensky, CDC Director, CNN, March 2, 2021

      “Dr. Walensky is right, and the reason she’s right is while things are way better than they were about a month and a half ago the level of infection in the country right now is the same as at the peak of the summer surge, so we’re not in great shape. And we have variants, and variants are starting to take over, and if they become dominant and we relax restrictions I think we can absolutely see a huge spike that will really lead to a lot more suffering… We have a high level of infection, we’ve got states easing restrictions, which they should not be doing at this moment, and we’ve got the variants that are circulating that are a lot more infectious. Put all that together and I can’t help but worry about where we’re going to be for the next couple months.” Dr. Ashish Jha, epidemiologist, Dean of the School of Public Health, Brown University, CNN, March 2, 2021

      “I have to congratulate this administration for what they have done…with the vaccines… But we also have to tell the story of what is still ahead of us. And at 2.9 to 3 million doses of vaccine a day, over the next 6 to 14 weeks, when this surge is likely to happen, is not really likely to take care of the problem at all… We still have a lot of high-risk people out there, and when this surge comes, they’re going to be highly vulnerable… The other thing we see right now is that every governor wants to open schools… and as a grandfather of five children I get it. But the problem is that if you look at Europe, the challenge we’re seeing right now is a lot of transmission in schools with this new variant… So we’re going to have some tough days ahead in the older population and the younger population with this new variant virus.” Dr. Michael Osterholm, Director, Center for Infectious Disease Research and Policy, University of Minnesota, on Meet the Press, March 7, 2021

      “The pandemic still remains a very serious situation.” Dr. Rochelle Walensky, Monday, March 8, 2021, Politico.

Dear Students,

The US reportedly delivered 2.9 million vaccines into arms yesterday, far ahead of what Joe Biden initially promised and almost at the 3 million per day minimum that experts have recommended. However, the UK variant (B.1.1.1) is rapidly becoming the fastest spreading strain in the US, destined to account for at least 50 percent of new cases in Americans in the next few weeks. In Britain and Europe, this has been the threshold for new and very serious burdens on health care systems.

Right now, we Americans are feeling good. The holiday surge is over, and cases, hospitalizations, and deaths have come down an astounding 70 percent since their winter peaks. However, this is primarily the result of the mess we made by our behavior on the holidays. When we’ve been banging our head against the wall harder and harder, there is only so much credit we can take for feeling better when we stop.

But now cases and hospitalizations are plateauing at levels higher than the summer peak when the virus swept the south and west and the national surges scared the living daylights out of us. We are stabilizing at that way-high level—a convenient platform for the virus to take off in a new surge—and, right on cue, we are starting to bang our heads against the wall again, with premature openings and ending mask mandates in some states and lazy complacency in many others.

These foolhardy blunders can easily take us from the high plateau we are on into a fourth wave that will once again cause scores of thousands of needless deaths.

As the photo suggests, we are in an arms race between evolutionary changes in the spike protein—the virus’s arm for prying open our cells—and the human arms getting jabbed in the vaccination campaign. The virus is flooring its Darwinian gas pedal with new variants of concern (VoCs) in South Africa and Brazil, yes, but also New York and Oregon.

Our university is among those that have seen surges in student cases—in Emory’s case an unprecedented outbreak after a year of safe performance—due to Superbowl parties, fraternity and sorority pledging, and other activities the virus loves. So many opportunities to evolve! Now spring break is coming for many colleges, and—well, here we go again.

Good news

  1. The Johnson & Johnson single-dose vaccine was given its expected Emergency Use Authorization, putting it on a par legally with the mRNA vaccines. The J&J is an adenovirus carrying viral DNA and is stable for weeks at refrigerator temperatures, a tremendous boon for rollout—as is the fact that you only need one jab. It is substantially less effective than the mRNAs at preventing cases (72 vs. ~95 percent), but, like them, close to 100 percent effective at preventing severe cases and death. Initial rollout has been slow but will ramp up fast.
  2. Not vaccines, but other preventive measures (masks, social distancing, handwashing), along with the pass-through of the holiday surge, have brought cases and hospitalizations down more than 70 percent. Nursing homes, where the most vulnerable have lived and died of COVID all along, have declined even more—in their case largely due to priority vaccinations.
  3. Total vaccinations, mainly with mRNA vaccines, have been deployed more and more effectively, with 450 vaccination centers and thousands of volunteers across the country. We are almost at 3 million a day, and if we can keep that up or, preferably, increase it, we have a chance of flattening the curve of the fourth wave. If we keep up masking and other preventive measures, we have a chance to avoid it altogether and by the end of the year bend the current high plateau way down—if the vaccines provide long-term immunity and the new variants can’t evade them.
  4. Herd immunity through widespread vaccination—up to 85 percent is needed—can be achieved and life can return to something close to normal, with tremendous positive implications for the treatment of non-COVID illnesses, education, jobs, and mental health. Healing from this dreadful national trauma will be under way.
  5. Dr. Peter Hotez has lauded the vaccine rollout in India as having the potential to save the world from the virus—even while reminding us that the US will never be safe from it until it is controlled (not necessarily eliminated) worldwide.
  6. The CDC finally came out with guidelines for people who have been fully vaccinated. They can be indoors with small numbers of fully vaccinated people without masks, or with well-known low-risk people from one other household. They should not go to gatherings, eat indoors at restaurants, and the like.

Bad News

  1. Variants of Concern now include the UK/B.1.1.7 (mutation N501Y), which spreads 50 percent faster and is sweeping the US but is susceptible to existing vaccines; the South Africa/B.1.351(N501Y+K417N+E484K), which spreads faster and is less susceptible to vaccines; the Brazil/P.1 (N501Y+K417T+E484K), same; the new New York variant/B.1.526 (S477N+E484K), same; and the Oregon variant/B.1.1.7 (N501Y+E484K), same.
  2. Lets put this bad news in English. For each of these codes, the number in the middle represents the consecutuve position of the relevant mutation on the viral spike protein. The before and after capital letters represent the one-letter code for amino acids. Thus N501Y means the amino acid in position 501 has changed from arginine to tyrosine due to an underlying mutation (replication error) in the RNA triplet that specifies 501. Since 501 is in the binding domain of the spike protein, the mutation can and does make it easier for the virus to bind with and enter cells—thus increased transmissibility.
  3. The two mutations at position 417 (K→N →or K→T) as well as the change at 477 (S→N) also affect the spike binding domain. All can enhance transmissibility and all are popping up independently in different places. Also, these Variants of Concern involve amino acid substitutions that change the shape of the folded spike protein at least a little, and are therefore able to enter our cells or resist our antibodies more easily.
  4. Most concerning to scientists appears to be the E484K mutant, (glutamic acid → lysine at position 484). This mutant, present in 5 of the 6 new strains named above, makes it easier for the virus to evade our antibodies, thus undermining both natural and vaccinated immunity. Its nickname is the “Eek” mutation, and yes, it is that scary.
  5. Mutations occur constantly, and some of them are adaptive, so the virus evolves. To paraphrase an old song, it’s a mighty restless bug in a mighty restless land. Scientists have a huge deal of trouble figuring out which of the many mutations are silent, and which, like the ones above, matter for humans. On top of that, the mutations operate synergistically, for better or worse, when they appear in the same strain.
  6. Since we still do a woefully low amount of viral sequencing, and overall testing and tracing are low and/or declining, we are fighting the new variants in the dark without a flashlight. Our friends in vaccine manufacture and development start scrambling to invent booster shots for new variants as soon as they appear, but it’s a race against time, vaccine development vs. viral evolution.
  7. There have been disappointments on the clinical side this past week. Convalescent plasma in a metaanalysis was shown to have no benefit on any standard outcome measures. Fortunately, it is being replaced with monoclonal antibodies that work better if introduced early in the illness. Dexamethasone (a steroid) increases mortality if given early in the illness but remains confirmed as effective in advanced stages. The IL-6 inhibitor tocilicumab helps if given after dexamesthasone but is harmful if given without dexamethasone. Something similar is true of other IL-6 inhibitors.
  8. Standard views about children being less likely to be infected than adults may be due to testing bias, so they may be equally vulnerable. It still seems true that they don’t get as sick, but a new study finds that as high as 13 percent of children who are infected will suffer from long COVID. Dr. Daniel Griffin, who gives the clinical updates on the This Week in Virology podcast, calls this “a disaster.” Long COVID goes up by age to peak in the age period 35-49; overall it affects at least one in five people who get infected with COVID-19.

States are opening prematurely. Governor Abbott of Texas, still reeling from accusations that his negligence caused scores of death in the recent snowstorm, has decided to cause thousands more excess deaths from COVID by boldly opening Texas “100 percent.” The governors of Mississippi, Arizona, and other states are doing the same.

This failure of leadership is a step by step repeat of the mistakes that led to last summer’s and then this winter’s surge, needlessly killing hundreds of thousands of Americans, and it will have similar consequences.

Such stupidity in leadership acts synergistically, like the evolving viral mutations, with the stupidity of ordinary Americans. If you have missed it, take a look at the photo on the left. It shows the good citizens of Boise, Idaho, ceremoniously burning masks outside the state Capitol. As with all ceremonies, this one expresses deeply held beliefs, and the adults are passing their beliefs on to their children with the ceremony.

As playwright Arthur Miller said, “The paranoia of stupidity is always the worst, since its fear of destruction by intelligence is reasonable.” These neighbors of ours have bad ideas, which they probably sense cannot hold up in the face of better ones, and since they are attached to their bad ideas, the possible loss of them makes them afraid.

Yet what can we do in the face of such stupidity except continue to meet it with the best intelligence we have? Meanwhile, as always, the stupidity of our fellow citizens, including leaders, puts us all at risk. Eek.

Stay safe. It won’t be too much longer, provided we aren’t stupid enough stretch it out again.

Dr. K

PS: Please don’t rely just on me. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York Times Coronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. I also recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning. For an antidote to my gloom, check out the updates of Dr. Lucy McBride, who doesn’t see different facts but accentuates the positive.

 

 

 

Sarsie Rides Again

            “We are not driving this tiger, we are riding it… We are the one country in the world that’s opening up faster than ice melting in a sauna. It’s crazy… Vaccine’s coming. But it isn’t coming fast enough. It’s not. We’re not going to see a big expansion of vaccine availability for at least weeks yet. We will. Eventually we will. And I think this summer is going to be a really wonderful time that way. But we’re a ways off. B.1.1.7 is here, those numbers are beginning to rise, and I feel like it’s a déja-vu-all-over-again moment.” Michael Osterholm podcast, March 23, 2021  

            “When I first started at CDC about two months ago I made a promise to you: I would tell you the truth even if it was not the news we wanted to hear. Now is one of those times when I have to share the truth, and I have to hope and trust you will listen. I’m going to pause here, I’m going to lose the script, and I’m going to reflect on the recurring feeling I have of impending doom. We have so much to look forward to, so much promise and potential of where we are and so much reason for hope, but right now I’m scared.” Rochelle Walensky, CDC Director, March 29, 2021

            “I’m telling you right now…we are just beginning this surge, and denying it is not going to help us. We are walking into the mouth of this virus monster as if somehow we don’t know it’s here. And it is here. Now’s the time to do all the things we must do to slow down transmission, not open up, and we’ve got to get more vaccine out to more people.” Michael Osterholm on CNN, April 1, 2021

            “We’re not driving this tiger, remember, we’re riding it  … No other country in the world is loosening everything up—pretending the virus doesn’t exist any more. Nobody’s doing that… We are creating the perfect storm. We’ve got a bad, bad virus. We’ve got a lot of people yet who can still be infected despite the fact that vaccines are rising. And we’re opening up as if we’re done with the virus. It’s like dismissing gravity. ‘I don’t want to deal with gravity any more today. I’m done with it.’ It doesn’t work that way.” Michael Osterholm podcast, April 1, 2021

Dear Students,

Some of you may remember my exclusive interview with the SARS-CoV-2 virus (“Sarsie”), way back in early June. He talked a lot about his relationship with Uncle Charlie—who he said was advising him on how to evolve. I didn’t think Darwin would do that deliberately, but Sarsie clearly obeys the old man’s laws.

Actually, he wasn’t interested in being interviewed.

“Professor, shut up and press the record button. I don’t need your questions. I can talk to the students directly, and anyway they’re bored stiff with your doom and gloom. I’ll give it to them, like the new Prez says, straight from the shoulder. Okay, I don’t have a shoulder. Straight from the spike then.

“When I spoke to you back in June I was gearing up, had notched a few wins on the evolutionary scene, and was getting ready for my real triumphs. This column is the half-time show in my superspreader superbowl.

“What’s that? You don’t like the half-time show idea? How about top of the fifth inning? Okay, bottom of the fifth. The home team, your species, is scoring some runs with vaccines. In June they were barely a wisp of a hope. Nine months later, they’ve been born, quadruplets, and they’re starting to grow up.

“I know, you think it’s the seventh-inning stretch at least, or even the end-game. You think you’re about to start hitting them out of the park. Dream on. I’m looking at half the game ahead, not counting overtime. And I’m so confident, I’m about to give you my playbook. Only fair. Homo dumbellus needs a handicap.

“Let’s review the basics as Uncle Charlie set them out: Variation, adaptation, duplication, reproductive success. If you remember two words, make them the last two. You don’t even need the words, really, if you can’t spare the space in your Homo dumbellus brain. Just the letters.

      “RS.

      “It’s Darwin’s own version of Newton’s Law of Gravity. If Variant B reproduces faster than Variant A did, B rocks. If Variant C does even better, it’s Bye-Bye Baby B. And so on. Insanely simple. Not like the rocket science you need to escape gravity. Even a dumbellus can understand Uncle Charlie’s law. Heck, even a virus can.

      “In June I reviewed my early life. Years in the bat-cave spinning my wheels, then a variant that let me jump to you. Nice shot, but more of a bunt than a home run. Then a variant that let me jump from you to you, and I took off like, well, a bat out of Wuhan.

“Mutation, mutation, mutation. I love those little bloopers. Most do nothing. Some knock off the adventurous virus that blooped them. But every once in a while, and don’t forget I’m reproducing zillions of times a day—that’s an approximation—I get one of those happy typos that makes my day, week, month, or year.

“Mutation. Variation. Variants. Variants of Concern.

“My first big VoC after my breakout from Wuhan was one you didn’t even know about at the time. It was the D614G. Let me clue you in how to read that gobbledygook. The spike protein is a string of amino acids (aa’s), and this means a change in the 614th one from aspartate to glycine. Just a blooper in duplication.

“Now that wasn’t so painful was it?

“The explanation wasn’t, but the reality was. It made me much more infectious. G614 outcompeted D614 by binding better to the ACE2 receptor that folds me into your cells. I had greater fitness; that is, greater RS.

“Remember Italy and Spain in early 2020? Wildfire there, then all Europe, then New York—the Big Apple. With D614G I gave my regards to Broadway, and after that the world. Wuhan was just a memory. By June, when I last spoke to you, my darling G614 had swept the globe.

“Big spring surge, then a rest, a bigger summer surge, and after a little vacation in early fall, you took a deep breath and I got set for my giant winter surge. It went well for me. How did it go for you? Oh yeah, I remember. Homo dumbellus. Thick skulls, stupid habits, stupid leaders.

“Wow, did I take off in January. The graph itself looked like a rocket ship.

“But I didn’t rest on my laurels. Uncle Charlie wouldn’t have liked that, and I always want him to be proud of me. Turns out there were plenty of dumbelluses in England, so I fixed my fitness lens on Trafalgar Square. You know. The UK variant. B.1.1.7.

“If I squinted, I could see old Charlie nodding in his photo. He must have also liked that you started naming strains according to their evolutionary history. Couldn’t very well have named it according to one mutation. It had 23! 23 differences from the Wuhan original.

“Eight were in the spike protein, and three of those are a big deal: N501Y, (a blooper changing asparagine to tyrosine), P681H (proline to histidine), and two aa deletions at positions 69-70. The tyrosine at 501 made my spikes even better at binding ACE2, my key to your cell’s locks. The other two changes probably helped me fold myself through your cell membranes.

“You can see why I thought I saw Charlie swell with pride. I was mixin’ & matchin’! I was upping my game several ways at the same time. God I love evolution. My UK variant soon proved up to 70 percent more infectious, and the Brits, who had gotten D614G from their Southern European cousins, returned the favor as a Christmas present, sending the new B.1.1.7 back to Europe and now the world.

“Let’s take a break from the gobbledygook and note that this variant is the one you dumbelluses need to worry about right now. It’s dominant in Europe and soon will be in the US and much of the world; the only thing that will contain it other than vaccines, which work but are not moving fast enough to beat it, will be other souped-up versions of me that hold it to a standoff.

“By the way, the B.1.1.7 is also more lethal. Don’t think for a minute that I like that. Billions of my bros go into a hole in the ground every time they kill one of you—if you were still infectious when you died. Heck, what happens as soon as one of you stops breathing? No breathing, no aerosols, no RS.

“That’s why I evolved to be less virulent—less lethal—than my cousins MERS and SARS-1. I out-evolved them to put it mildly. Dumb as your species is, it gives me no pleasure to kill you. I want infections with few or no symptoms, especially in young people, whose restlessness and appetites whisk me around the world.

“Speaking of which, the world is welcoming me in more variants than one. The South African one, B.1.351, also has the N501Y blooper, but in combination with other changes in my recipe—K417T (lysine to threonine) and E484K (glutamate to lysine)—that make me resistant to your vaccines, even if Africans can get them. Africa is to me a vast unconquered world, an evolutionary opening of collossal proportions.

“Then of course Brazil, where the so-called leaders are as bad as yours, and they’re welcoming me to a banquet. My P.1 variant has 17 unique bloopers, including three that affect our binding to your receptors: K417T, E484K, and N501Y. The P.1 came out of the Amazon—famous for its diverse life forms, including me—and swept the country. But you don’t think my boys are going to stop at the Brazilian border, do you?

E484K, aka the “Eeek” mutant, may be my jiu-jitsu trick to duck your immune systems and even vaccines. You can bet I’m going to make good use of the Eeek in the future. I’ve already popped up with it in Oregon independently, meaning—Uncle Charlie rocks—parallel evolution. If I can evolve that one pretty much anywhere, and it does turn out to nix your vaccines, well, Katie bar the door.

“Meanwhile, there’s a new New York variant, the B.1.526, which affects young people more, and a new two-form California variant, the B.1.427/B.1.429, with three spike protein mutations, including the novel L452R (leucine to arginine), that make it more contagious.

“Understand: most of your species hasn’t seen any version of me yet. I’m just getting started with them. See what I mean about half time? Bottom of the fifth? I still have to get to the majority of the species, and I will keep spreading faster than vaccines. I will also keep evolving. So you Americans beat the versions you have with the vaccines you have. But wait, you already have the Eeek!

“And something else: Do you think the bottom half of the world won’t be sending evolved versions of me back to you next year? The year after?

“Eventually you’ll fight me to a standoff with evolving vaccines. The smartest strains of your dumbellus species—the scientists—move fast enough to do that. But eradicate me? Forget it. Boosters for waning immunity, annual shots like my bro the flu, we can make a deal.

“A guy like me has a career trajectory. I could evolve toward even less virulence, become more like the common cold than the flu. Just bubbling up, year after year, not much damage but spreading just fine, bubbling and bubbling forever.

“So now you have my playbook and my retirement plan. We’ll get along eventually—after the pandemic game, my species against yours, is over. Which it isn’t even close to being yet. Like the man said, don’t dismiss Newton’s Laws, or Darwin’s. If it’s the bottom of the fifth, you, the home team, are up. Are you going to continue to let me strike you out? Or do you finally hit one out of the park?”

Maybe I should ask Sarsie to say what he really thinks.

He claims he doesn’t like to kill us, but he’s killed 550,000 of us in a year. We’re losing over a thousand a day and that is not declining; cases and hospitalizations are rising, and deaths will rise too.

It’s a fierce evolutionary process that can do that for one, two, three, and soon four American surges. Some biologists say that viruses aren’t really alive. Sarsie said last time, rather annoyed, “I’m alive and I’m eating you alive.”

Either way, his biological evolution has been amazing; cultural evolution is supposed to be faster, but our cultural evolution in response to him continues to lag way behind.

Stay safe,

Dr. K

PS: Please don’t just rely on me. The most important addition I have since my last update is Dr. Michael Osterholm’s weekly podcast from CIDRAP, the Center for Infectious Disease Research and Policy of the University of Minnesota; it drops on Thursdays. He combines realistic assessments and warnings with uplifting stories about how people are finding light and small victories in the pandemic. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York Times Coronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. I also recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning. For an antidote to my gloom, check out the updates of Dr. Lucy McBride, who doesn’t see different facts but accentuates the positive.

 

 

Robin in the Coal Mine

            “‘Michigan is an outlier that’s profound,’ said Dr. Eric Topol, a professor of molecular medicine at Scripps Research in La Jolla, Calif. ‘This is a precedent in the country. It’s about plasticity, flexibility in responding, in being able to pivot.’ He added that tens of millions of doses were sitting unused across the country, and ‘in some states, you can’t even give them away…’ Vaccines could have been surged to Michigan weeks ago when signs of its new wave of infections were appearing, he said, like signs that are now showing up in other states, such as Minnesota. ‘We have this incredibly powerful tool, and we’re not using it…And it’s just an outright shame.’” The New York Times, April 13, 2021

            “Hi this is Michael Moore and this is an Emergency Podcast System episode… I appeal to my friends across this country and across this world: please stand for Michigan. Please come to our aid. The level of COVID cases has doubled, then it tripled, then it quadrupled…  We need to act immediately. This is a surge that’s out of control… Sadly the CDC has decided, the Biden administration has decided, not to give Michigan any more vaccines during this very sad turn of events. Now I think that’s wrong. And I think that we need to demand that the vaccine—the Pfizer vaccine that is made in Michigan, in Kalamazoo Michigan—that we get as many of these vaccines into as many arms as possible…to help put a stop to this UK variant. But if it gets ahead of the number of vaccinations…we may not catch up. And believe me there’s no Covid border around the state of Michigan. This…will happen where you live… So number one, the CDC needs to send more of the vaccine to Michigan, in hospitals, doctors, clinics, every pharmacy…This needs to happen in the next few days, not next week, not next month. The Governor of Michigan has to shut the state down…just for a little bit, this is not some long-term thing here this is just right now, immediately, to try and bring an end to this rapid, rapid epidemic in Michigan… Both are wrong; the CDC is wrong, the governor of Michigan is wrong. Let’s get this fixed right now. Please call your Congress people and your Senators at their switchboard on Capitol Hill 202-224-3121. Please contact the governors office…in Lansing, Michigan, and please go on WhiteHouse.gov and send a note to President Biden and ask him to please increase the amount of doses to the state of Michigan this week, right now, let’s not let this thing grow…it’s critical right now, this doesn’t need to happen… This just has to end. Everybody get your shot, everybody wear a mask, everybody keep your social distance and wash your hands. Be kind to each other. And politicians, the Governor, please, please…close it down just for a little bit. And the CDC: you’ve got to send us more vaccine…” Documentary filmmaker Michael Moore, Podcast #182, April 12, 2021

            “[Michigan] State Representative Steve Johnson, a Republican, said he doubted that many people would comply with a lockdown order. ‘For [Governor Whitmer] to try to continue those measures would have been political suicide,’ he said.” The New York Times, April 13, 2021

Dear Students,

The American Robin is the State Bird of Michigan, and it’s shown here singing its heart out on the graph of the new massive surge in the state. Michigan’s coal mines were tapped out decades ago, but there’s a saying about “the canary in the coal mine” that warns miners of toxic gas, not by singing but by dying.

Plenty of people in Michigan are doing that job for us in America, where we just keep digging ourselves deeper into a hole that the Michigan Robin is trying to warn us about. Of course, it’s just the Michigan population of the American Robin, just as the Michigan virus is part and parcel of good ol’ American SARS-CoV-2.

Michael Moore is right to say that Michigan’s Governor Gretchen Whitmer should ideally shut down the state again. But as that state legislator Steve Johnson points out, it would be political suicide.

If only that were the worst form of suicide it could be.

Last spring lockdowns led a Trumpist mob to stage an armed coup in the State Capitol building, a coup that actually succeeded in shutting down the legislature for several days. Obviously it was another robin in the coal mine, warning us of a similar coup attempt on our nation’s Capitol on January 6th. We have not seen the last of these.

But meanwhile, a group of deadly serious armed plotters were planning to kidnap Governor Whitmer, ending her administration, and some of them were planning to kill her. This planned assasination and coup was aborted by the FBI, but the next one may succeed. That doesn’t mean that she doesn’t have a duty to keep the people of Michigan safe, she still does.

But it’s pretty sickening when CDC Director Rochelle Walensky sits in the complete safety of her office in Washington and turns down a threatened and vulnerable Governor who is begging for vaccines. Walensky and President Biden have miserably failed the people of Michigan, and they will soon be failing much larger swaths of America, by insisting on a pigheaded policy of distributing vaccines exactly in proportion to a state’s population.

That means not only the Michigan surge but other state and regional surges to come will be ignored while millions of doses of vaccine sit unused. Biden and Walensky are already planning how to distribute internationally hundreds of millions of doses that will comprise a huge American surplus in a few weeks time.

Do I understand that vaccines take weeks to start working? Yes I do, and you know I do if you’ve been following what I’ve said all along about them. But that just means that Biden and Walensky failed Michigan weeks ago as well. Dr. Ashish Jha, one of the leading public health voices throughout the pandemic, tweeted on April 8, “This is very upsetting. Michigan is struggling. We need to be surging tests, vaccines to the state.” The idea that it is too late now is in my view absurd. Vaccines now could prevent millions of Michigan cases a few weeks down the road, even with one dose of a two-vaccine regimen.

What Walensky and others are saying to justify not doing this is a disgusting evasion. They are playing a political game. You can be that if this surge were in Texas or Florida they would not be withholding vaccine. Michigan is a blue state, like the color of the sky behind the robin. Biden’s people are afraid of seeming to favor Democrats, so they are letting Michigan and its Democratic Governor twist in the wind.

That’s the game—avoiding blame—instead of avoiding illness and death.

Walensky said, “The answer is not necessarily to give vaccine.” Not necessarily? What kind of mealy-mouthed answer is that? And, “The answer to that is to really close things down, to go back to our basics, to go back to where we were last spring, last summer, and to shut things down.”

So, Dr. Walensky, is your boss going to send troops to protect Governor Whitmer and her family? Are you going to stand beside her in Lansing when she faces another anti-lockdown mob that wants to kill her?

Michael Moore understands the value of “everybody wear a mask…keep your distance, and wash your hands.” He is also, like Governor Whitmer, begging, begging for a surge of vaccines for Michigan.

Dr. Eric Topol, whose twitter feed has been a vital source of information for me and thousands of others throughout the pandemic, thoroughly understands and promotes the tried-and-true precautionary measures, and knows, as I do, that they would be a faster response to the Michigan crisis than additional vaccines would.

He also said about extra vaccines for Michigan, “We have this incredibly powerful tool, and we’re not using it…And it’s just an outright shame.”

Where Dr. Walensky or anyone else gets the idea that vaccines and masks are substitutes for each other is beyond me. I do think however that we are watching a political game run by Biden in his Michigan vaccine-refusal gambit, just as we so often watched Trump play as President.

The irony is that Trump’s political game worked against blue states like New York and Biden’s political game is working against the blue state of Michigan.

Good News

  1. Biden’s performance in rolling out the vaccination program nationally, despite my grave reservations expressed above, has more than met expectations. I criticized him for thinking at first that a million shots in arms a day was an achievement, at a time when experts were saying 3 million a day were needed. Biden deserves credit for getting to that number as an average, with maximums up to 4.6 million. We will have 200 million jabs by the end of Biden’s first 100 days, double his original goal.
  2. Biden and his associates frequently wear masks in public and preserve social distance, setting desperately needed examples for the American people—examples which, very happily, are the opposite of what we had for the previous first year of the pandemic. Biden takes frequent opportunities to encourage these measures as well as thinking about ways to address the looming problem of vaccine hesitancy.
  3. Data continue to emerge confirming the safety and effectiveness of the two mRNA vaccines, which represent a completely novel kind of vaccine science and one of the greatest achievements in the history of medical science. In addition to safety and efficacy, the mRNA technology afforded an unprecedented platform for speed in development of the original vaccines without compromising safety, and it will continue to provide a platform for speed in the relentless arms race against new variants of the virus, allowing for the development of variant-specific new vaccines and boosters with unprecedented speed. (Read the moving story of Dr. Kati Kariko, the brilliant and heroically self-sacrificing lab-science gypsy who helped lay the mRNA groundwork.)
  4. Just in the last few weeks some uncertainty has been removed about whether fully vaccinated people can contract, carry, and pass on the virus asymptomatically. The answer increasingly appears to be, for the most part, no, even with the much more transmissable and more virulent UK variant. Also, current protection against hospitalization and death, at least with the UK variant and the main one preceding it, appears to approach 100 percent.
  5. Monoclonal antibodies (aka passive vaccinations) have continued to prove themselves as useful if not magical. They still require intravenous infusions but are increasingly doable in outpatient settings, and they prevent early cases from progressing to hospitalization. Increasingly too, they are being introduced for people who have no symptoms but positive tests for active virus and even for people who just have known exposure. Vaccines are not much use in these situations. Research on intramuscular injection of monoclonals is under way, and if successful would greatly enhance the deployment of this lifesaving technology.

Bad News

  1. The Johnson & Johnson (Janssen) vaccine has been halted because of a blood clotting problem affecting about one in a million vaccinated people (6 in the US; one died and one is gravely ill). This is a similar adverse effect to that suspected with the AstraZeneca vaccine. In both cases the nature of the clotting disorder is unusual, and so unlikely to be part of the background clotting problems expectable in such a large population. The J&J patients were women of reproductive age, suggesting an immune system problem. The halt, if it has to continue, removes a single-dose vaccine from the toolkit, a loss for the US but a much more important loss for the world.
  2. 200 million doses in American arms by the end of April (Biden’s 100 days) means 100 million people fully vaccinated, approximately 30 percent of the US population, or less than half of the level needed for herd immunity. Even adding the immunity of people who’ve had the virus doesn’t get us near herd immunity, which is at best months away—without taking the newest variants into account, with their potential for resistance against immunity and vaccines.
  3. Vaccine hesitancy, particularly common among Republican men, will play an increasingly large role as more of the country is vaccinated. Children will not even begin to be vaccinated until late summer at the earliest. Herd immunity is not a slam-dunk; it will be an increasingly uphill slog as long as vaccine acceptance is politicized.
  4. I have become increasingly convinced, thanks to Michael Osterholm who along with a few others has been arguing this for months, that we should be using our vaccine doses very differently. Namely, we should administer twice as many first doses of the two-dose vaccines rather than insisting that people get a second dose within a few weeks of the first. As Osterholm cogently argues, using two doses to give two people first doses results in 80 percent protection for both, while giving two to one person and none to the second person results in an average of 47.5 percent protection, since the two-dose person has 95 percent protection and the other has zero. Mathematical models easily show that Osterholm’s strategy gets to herd immunity faster.
  5. Last, and most important, the pandemic is not an American problem or a developed world problem but a global one, including a general threat of global instability. We have not even begun to fight the global war against the virus. Herd immunity for the world will take years to achieve. You don’t need to care about humanity, just the long-term repercussions for you. The virus loves the global stage, which is its evolutionary playground. We already have growing numbers in our country of the South Africa variant (B.1.351) and the Brazil variant (P.1). What new variants will evolve in the slowly vaccinated populations of poor countries and bounce back to us in ’22 or ’23? Stay tuned.

Michigan, the robin in the coal mine, represents what much more of America will be facing in the months ahead. If the Biden administration does not drop its political games and surge vaccine supplies to states and regions that have surging virus—whether blue or red—we will be wasting time and vaccine doses and causing preventable deaths. The time may come soon to tally up the deaths cause by the Biden administration’s sometimes willful errors, just as we have done with Trump. They won’t be as many, but they will be substantial. Biden doesn’t get a pass on a bad decision because it followed two good ones.

Also, we need to look at the evidence for Osterholm’s claim that vaccinating twice as many people once would save many thousands of lives. We only found out recently how much protection one dose of the two-dose vaccines gives us. As Dr. Topol said, “It’s about plasticity, flexibility in responding, in being able to pivot.” New knowledge brings new responsibility.

Old knowledge helps too. Mask up. Keep your distance. Avoid gatherings. Use caution until we see what the new variants can do. This is not over, not even close.

Stay safe,

Dr. K

PS: Please don’t just rely on me. The most important recent addition I have is Dr. Michael Osterholm’s weekly podcast from CIDRAP, the Center for Infectious Disease Research and Policy of the University of Minnesota; it drops on Thursdays. He combines realistic assessments and warnings with uplifting stories about how people are finding light and small victories in the pandemic. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York Times Coronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. I also recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning. For an antidote to my gloom, check out the updates of Dr. Lucy McBride, who doesn’t see different facts but accentuates the positive.  

 

 

 

 

 

 

Oasis in a Burning World

            “This virus is telling us, loud and clear, it is not done with us. It is not done with us.” Dr. Michael Osterholm, CIDRAP podcast, May 6, 2021

            “The spring wave has not really materialized. I’ve been describing it as this spring plateau, if you look at numbers across the country… We’re actually looking at a really good July ahead of us… So this is the time for masks, distancing, outdoors versus indoors, limiting group sizes, all these non-pharmaceutical interventions as we call them, and vaccination…” Dr. Daniel Griffin, “This Week in Virology” podcast, May 6, 2021

The United States is following Israel and the UK in winning the vaccination vs. variants battle, with evidence that nationwide and even in states like Michigan, where signs were ominous, the number of cases, hospitalizations, and deaths is slowly declining. The feared fourth surge has not materialized. The faster-spreading variants have not proved resistant to the vaccines or to natural post-infection immunity so far.

New York Times, May 9

We plateaued at too high a level after the winter surge plummeted, and a few weeks ago we began to rise from that too-high plateau. But vaccinations had doubled from one to two million per day and then doubled again to four million. This stopped the fourth surge and the slow decline began. We are still not yet below the high March plateau, but with a continued slow decline we could be in a better place soon.

Vaccinations have dropped back to between two and three million a day and may drop further until they are deployed to children. Vaccine stupidity, euphemistically known as vaccine hesitancy, explains this.

Still, the country has fought the virus to a standstill on a hill some feared we couldn’t hold, and we fought it down the hill. If we can fight it down further off the high plateau, we might just win the war. As always of course, this involves not just vaccinations but other precautions, especially those against swapping air.

But the situation in India is heart-breakingly bad and worsening by the day. Latin America is also going in the wrong direction. It is still reasonable to fear that these epidemiologically chaotic and tragic situations will allow the virus to evolve new variants over time that can come back to haunt us.

For this reason it is not just a humanitarian imperative but a self-protective one to help these suffering overseas populations in every way we can. The US may be steadily improving, but how we keep safe in the long run in a world in danger is a question we have not yet answered.

Good News

  1. The one-dose Johnson & Johnson vaccine that probably caused an extremely small number of blood clots has been reapproved by the FDA and the CDC and redeployed for emergency use alongside the two two-dose mRNA vaccines, along with instructions for monitoring and treating the rare clots. It may not be needed in most US situations but it is very important for the world.
  2. The CDC has expanded its list of what fully vaccinated people can safely do. It does not represent a complete return to normality, but it certainly adds many freedoms and reinforces the desirability of getting vaccinated.
  3. All US adults are now eligible for vaccinations regardless of age or other conditions contributing to vulnerability. There is plenty of vaccine for everyone.
  4. Pfizer has applied for full rather than emergency use approval for its vaccine. This will take time but adds to the correct perception that the vaccines are safe.
  5. Pfizer is expected to be authorized this week to vaccinate adolescents 12 to 15 years of age, a group where the vaccine has proved extremely effective and safe. This has great implications for school openings and is essential if we are ever to achieve “herd immunity.”
  6. Both Moderna and Pfizer are conducting clinical trials in children under 12. Completion and approval will take some time, but the positive implications are very similar.

Bad News

  1. Vaccine “hesitancy” and refusal—largely associated with political views—are causing a serious slowdown in vaccinations and will surely prevent the US from developing “herd immunity” to the extent that that is even possible. Many parents are expected to refuse vaccination for their children.
  2. Two days ago the CDC, following the lead of the WHO one week earlier, finally acknowledged that SARS-CoV-2 the virus that causes COVID-19, is transmitted in aerosolized form. It is airborne. This means that all enclosed indoor spaces can spread the virus in forms that float in the air for a long time, farther than a distance of six feet. I don’t understand what took them so long, as the signs of airborne transmission (not just droplets that gravity pulls to the ground in short order) have been fairly clear since the beginning.
  3. School reopenings remain challenging and controversial. Schools were involved in the Michigan surge, although frequently the virus was brought into the schools from the community rather than the other way around. The CDC’s latest guidelines for school reopenings are confusing and too expensive and difficult for many, perhaps most schools, to implement. Everyone agrees that the cost of keeping schools closed is great. We need more clarity about the risks and costs of opening.
  4. India is in by far the worst phase of its epidemic so far, and has the worst statistics in the world. Hospitals have been overwhelmed for weeks. Since there is no way to take care of or even evaluate all the country’s cases, nor any room in hospitals for people with life-threatening cases, all these terrible statistics are gross underestimates. Expert calls for a national lockdown go unheeded. Vaccines are scarce. Spread to Pakistan, Nepal, and other neighboring countries is happening fast. Thailand and Laos are also experiencing surges.
  5. Latin American virus statistics are also ominous. Brazil’s statistics, among the worst in the world for many months, has experienced some improvement, but remains in crisis. Uruguay, Argentina, Costa Rica, and Colombia are four of the ten worst-off countries in the world for COVID-19.
  6. SARS-CoV-2 continues to evolve new variants of concern, and each one presents potentially serious new challenges. The international situation now and over the next months will provide many new evolutionary opportunities for the virus.

There is a myth that the virus does not affect children. Children make up a large and increasing minority of US cases today. Thousands of children have been killed by the virus in Brazil. Why? New variant? Careless failure to protect them? We don’t know.

I don’t sympathize with people who spit in subway stations, smoke in restaurants, refuse to use seatbelts, mock the use of masks, crowd together, or turn their backs on vaccines. They are a clear and present danger to themselves and all around them.

So is anyone who fails to see that this pandemic is global and that the virus will evolve globally, continuously, and unpredictably going forward.

Stay safe, enjoy the American spring.

Dr. K

PS: Please don’t just rely on me. Dr. Michael Osterholm’s weekly podcast from CIDRAP, the Center for Infectious Disease Research and Policy of the University of Minnesota drops on Thursdays. He combines realistic assessments and warnings with uplifting stories about how people are finding light and small victories in the pandemic. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Daily Digest. More generally, I recommend the following: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast; Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York Times Coronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. I also recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning. For an antidote to my gloom, check out the updates of Dr. Lucy McBride, who doesn’t see different facts but accentuates the positive.  

Juneteenth. 605,000. 2.9x. 2.0x.

            “All we have to do is look at the situation in India and Nepal…and in the United Kingdom, where variants of COVID-19 have become the dominant virus in those populations—in the UK despite a somewhat successful vaccination campaign. And those variants have different properties that increase the ability of this virus to spread and…eventually cause disease in the population. Anytime we give the virus a chance to get to know its host better, to get to see immunity against it, the natural selection principles laid out by Charles Darwin suggest that variants that are more fit will emerge. And, particularly in the US, we can’t look past that, because we really have sort of a dual population, we have the unvaccinated and the vaccinated, in many places the unvaccinated are larger than the vaccinated populations, and that just sets up a situation where the virus can see immunity, can go into people who don’t have immunity, and that back and forth is essentially how my laboratory selects variants when we’re studying them. So we’re setting up that scenario within the population, and that’s not a good thing for us to be doing.”

Dr. Andrew Pekosz, Johns Hopkins Bloomberg School of Public Health, June 11, 2021

 

Dear Students,

Being in a meditative mood, I want to reflect back as well as forward on this particular day, but being who I am my reflections start with numbers. It is said that a civilized person is one who can look at a page of numbers and weep. I don’t know how civilized I am, but these four numbers become a little blurry when I dwell on them.

Juneteenth, of course, is short for June 19th, the day in 1865 when the last black slaves in Texas were told of their freedom. Today is the 156th commemoration of that day, but the first 155 were unofficial. Now Juneteenth is a national holiday.

The holiday was declared by President Biden just a few days ago, perhaps on the same day that the total number of deaths in our country crossed the milestone of 600,000. It’s hardly something I wanted to be right about, but on December 15th I wrote an update called “Double Down or Double Deaths.” We had just crossed 300,000, and vaccinations had begun, but masks and social distancing were as important as ever, and the vaccine syringe was a shiny object I feared would distract us from these vital preventive measures, which we should have been doubling down on. We did not double down, so we doubled deaths.

George Floyd statue unveiled in Newark, NJ

2.9x is the odds ratio of blacks vs. whites being hospitalized with COVID-19, and 2.0x is their relative risk of dying. Some 89,000 African-Americans have died of it, and it’s a good bet that every one of them said, or if they couldn’t speak, thought, “I can’t breathe,” while dying—just as George Floyd did when he was being murdered by a policeman on a Minneapolis street.

So Juneteenth is well worth commemorating today and on all future June 19ths, but I am not sure how much celebration is in order. Those slaves in Galveston heard about their freedom, but the senses in which they were freed were limited. They were delivered into poverty, landlessness, wage slavery, fake and reversible “Reconstruction,” a century of Jim Crow with its countless lynchings, then a limited process of integration, reversible Voting Rights and Civil Rights laws, police brutality, and essentially permanent gaps in wealth, income, housing, education, imprisonment, and of course health—meaning life.

The same state of Texas they were supposedly freed into in 1865 is taking away their freedom—their voting rights—actively and aggressively, on this first official Juneteenth holiday. The same US Congress that passed the Voting Rights and Civil Rights Acts of the 1960s is, today, aggressively blocking legislation that would protect those laws from being dismantled by Texas and dozens of other states.

So as we celebrate this first Juneteenth National Holiday, white power elites are taking freedom away from blacks—to the cheers of their poor white dupes of course—as they have always done. They are preventing schools from teaching the truth as it actually happened, exactly in the spirit of Holocaust Denial, and with similar consequences. They are building and protecting the New Jim Crow, with state legislators, governors, police, and prison wardens taking the place of the Ku Klux Klan. They are redrawing red lines in housing, jobs, education, and health care delivery that generations have struggled to erase.

Do we think that a federal court system stuffed with young conservative appointees, crowned with a 6-3 hard-right Supreme Court like a rancid cherry on top is going to prevent these nationwide trends? Please. Do we think that with all these new forms of voter suppression the Democrats will keep their paper-thin margin in the Congress a year-and-a-half from now, and the White House two years later? I will let that question hang, and turn to more urgent matters that I personally know more about.

We are about to see the Southeastern Region, including my own state of Georgia, become the new experimental cauldron of differential death. The disparity between the races is much greater down here, in everything, even while the percentage of African-Americans is much higher. Oh, and the vaccination rates? The lowest in the country. The situation is ripe for a new variant of concern to cause a new surge, and as always a new chance for blacks to be sickened and killed more than whites.

Is there such a variant? Yes.

The variants now have Greek letter names to avoid stigmatizing countries or forcing us to memorize long strings of numbers. The original variant first seen in Wuhan (FSI-W) is the baseline. The first evolved variant of concern (FSI-UK) is now called Alpha, which because of greater transmissability caused grave problems in Britain in the winter. Beta (FSI-South Africa) is able to overcome a number of vaccines to a concerning extent. Gamma (FSI-Brazil) spread very fast there, has unexplained properties, and has been seen in many US states.

But the most concerning so far is Delta (FSI-India), far more transmissible than Alpha, which was far more transmissible than the baseline virus. It already predominates in the UK and is spreading fast in the US, especially among children and other unvaccinated people. Vaccine experts seem confident that they will be able to come up with solutions to present and future variants, sooner or later—for the vaccinated, currently a fraction of the world.

Good News

  1. New York, California, and many other states are opening up, pretty much completely. Air travel is huge again, and restaurants are humming. Some states and countries have vaccination rates that justify these comebacks.
  2. Continental Europe’s vaccination program has finally gotten traction and looks like it will continue to accelerate for a while. Israel led the world in vaccination success, the UK was not far behind, and Canada has caught up to them.
  3. India, while still very burdened, has seen a decline in cases in recent weeks that suggests that strict lockdowns in April and May worked (the full vaccination rate is 4%).
  4. Monoclonal antibody studies have continued to bring very good news. If you are offered them after testing positive, with or without symptoms, do not say no.
  5. Novovax has added a new vaccine to our armamentarium. It is based on a more conventional technology than mRNA, tried-and-true for several others, and it seems to have fewer unpleasant effects even after the second dose.

Bad News

  1. The relatively high vaccination rate in the US hides marked regional variation. The Southeastern and some other traditionally Republican states have low vaccination rates and are accordingly vulnerable. The politicization of our national response to the virus has been and will be absurd and deadly.
  2. Biden’s vaccination program accelerated from 1 to 3.5 million a day in his first 100 days, but then plummeted to less than a million and is now almost sure to fall short of his target of getting 70% of Americans vaccinated by the Fourth of July.
  3. India is projected to have a third surge in a few months time, and there is little sign that vaccination rates will go up enough to prevent this.
  4. Japan has decided to proceed with the Summer Olympics, already postponed from last year. The vaccination rate is about 5 percent and not likely to increase to adequate levels by the time of the games. Preventive measures will be used, but the majority of the country does not want the games to go on.
  5. The UK was slated to open up completely on June 21st, but the Delta variant is spreading so fast there that Prime Minister Johnson has postponed opening until July 19th, a decision met by widespread protests.

My friend, poet Marilyn Mohr, shared a poem with me recently that captures the message and the anguish of the virus. It reads in part:

Carried on the moisture of our breath,

it contains us in loneliness, cages us in fear.

We cannot sing or touch, even our smiles are masked.

Of course we want to reopen, reconnect, celebrate. We are starting to be able to do that. But we for now we need to keep looking over our shoulders. Please take to heart the exquisite clarity of Dr. Andrew Pekosz’s explanation of our situation and how the disease works. Please remember that the virus is always changing, and that some of us are more vulnerable than others.

Now that Juneteenth is a national holiday, it would be nice to have a period of national reflection between it and July 4th. In a sense July 4th is meaningless without Juneteenth, which was one halting step (among many, with many more needed) toward realizing the promise of our Declaration of Independence.

Jews have a period of self-examination and penitence for ten days from the New Year to the Day of Atonement. Juneteenth to July 4th could be a more celebratory period, but the self-examination could be equally useful.

See you in the fall I hope. Stay safe,

Dr. K

PS: Please don’t just rely on me. Dr. Michael Osterholm’s now biweekly podcast from CIDRAP, the Center for Infectious Disease Research and Policy of the University of Minnesota drops on alternate Thursdays. He combines realistic assessments and warnings with uplifting stories about how people are finding light and small victories in the pandemic. The best resource on what is happening specifically in the state of Georgia is Dr. Amber Schmidtke’s Covid Digest, now weekly. More generally, I recommend the following: This The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; for the science of viruses, especially the new coronavirus, This Week in Virology (TWiV) podcast, including Dr. Daniel Griffin’s superb clinical updates from the front lines. Dr. Sanjay Gupta’s podcast, Coronavirus: Fact vs. Fiction; COVID-19 UpToDate for medical professionals; and for the current numbers: Johns Hopkins University (JHU); Institute for Health Metrics and Evaluation (IHME); Our World in Data (OWiD); The New York Times Coronavirus Resource Center (NYT). For uncannily accurate warnings, follow @Laurie_Garrett on Twitter. I also recommend this COVID-19 Forecast Hub, which aggregates the data from dozens of mathematical models, and this integrative model based on machine learning. For an antidote to my gloom, check out the updates of Dr. Lucy McBride, who doesn’t see different facts but accentuates the positive.  

Bad Breath

“It’s kind of like people dying in a war after the peace treaty has been signed.” Dr. Sanjay Gupta, CNN, July 14, 2021

“This is like the moment in the horror movie when you think the horror is over and the credits are about to roll. And it all starts back up again.” Rep. Jamie Raskin (D, Maryland), July 22, 2021

“Folks are supposed to have common sense. But it’s time to start blaming the unvaccinated folks, not the regular folks. It’s the unvaccinated folks that are letting us down.” Alabama Gov. Kay Ivey, July 23, 2021

“Political division, disinformation and, frankly, stupidity are costing lives. It is not authoritarian to mandate vaccines in America.” Ian Bremmer, President, Eurasia Group, July 26, 2021

“Sometimes praying isn’t enough. I yell at Jesus if I need to.” Laurie Douglas, COVID-19 care nurse, CNN July 31, 2021

“I wish I could snap so many people out of their selfish stupor but I can’t, so I get to watch instead as people learn the hard way; with a tube down your throat. With a ‘code blue, code blue!’ and the crack of a sternum.” Kathryn Ivey, COVID ICU nurse, August 2, 2021

“We are seeing more and more pediatric patients coming in with COVID-19… I would love everyone to look within themselves and do what is right for their family, for our children, for our community… But if people aren’t going to use common sense, then unfortunately mandates may be important and necessary.”  Dr. Kelechi Iheagwara, Medical Director of the Pediatric ICU, Our Lady of the Lake Children’s Hospital, Baton Rouge, Louisiana, August 14, 2021

 

Dear Students,

I have not written an update since Juneteenth, by far the longest I have gone without writing. I have to say that I have been too discouraged. I realized that I could pretty much compose a new update with quotes from my updates over the whole tragic period since early 2020. I use the word “tragic” advisedly. What is tragedy after all but a catastrophe that was avoidable except for some profound human flaw? Why keep writing about it? Because some students and other readers tell me they trust the way I sift through vast amounts of bewildering information and say clearly what I think.

Since it’s my first update since Juneteenth, I want to start by showing you the chart on the right (from a recent article in Health Affairs; FPL means Federal Poverty Level), which shows more strongly than anything how we as a society have failed African-Americans. It really is astounding. It has been said that a civilized person can look at a page of numbers and weep. This chart should bring tears to your eyes. I wrote on Juneteenth, “2.9 is the odds ratio of blacks vs. whites being hospitalized with COVID-19, and 2.0” is their relative risk of dying.” This chart shows that no matter your insurance status, family income, or type of work, you were far more likely to die during this pandemic if you were black than if you were any other kind of person. This is systemic racism, an extension of slavery and Jim Crow, and it is our failure as a nation.

So what I am going to say about vaccine resistance (different from vaccine “hesitancy”), and opposition to masking pretty much exempts black people—let’s call it the Tuskegee exemption—although the chart  tragically shows they would benefit most from vaccination. (The Rand Corporation conducted a study of vaccine hesitancy in black communities last December.) Also exempt, of course, are the small number of people who have legitimate medical reasons for not being vaccinated.

I am talking about white people who carry placards lying about vaccines and masks. I am talking about white governors who repeat the lies or ban mask mandates. I am talking about TV personalities and social media “influencers” who are leaders in the lying. They are, all of them, not just liars but killers, spreading highly deadly disinformation.

I am tired of people who repeat self-serving lies, and I am tired of people who coddle them, who want to make nice-nice with them and help them come around to abandoning their lies. I don’t have time for such psychotherapy. If it’s someone you love, persuade them if you can. But don’t expect the rest of us to wait and see if your persuasion works.

Here is what I want to say to them:

You have bad breath. You have foul, diseased, deadly breath, both when you are spewing your lies and when you are breathing on me, and my children, and my grandchildren, who have done everything humanly possible to fight off this virus, while you have done everything possible to give aid to the enemy. You are traitors to the United States and to the human race. Soon you will be ostracized by widespread mandates, because coercion is all you understand. You will not be forced to accept a vaccine or wear a mask, you will simply be excluded from places where your obstinacy and stupidity can hurt people who have more common sense and more respect for others than you do.

I say to you: Breathe on each other, not on us. Spit on each other if you like, it amounts to the same thing. Keep your filthy, disgusting, sickening breath and other excretions to yourselves and others like you. Stay away from me and those I love.

Polls show that the great majority of all unvaccinated people state that they will not or probably will not get a vaccine. This is not lack of access, this is opposition. Every minute of every day we use laws, rules, mandates, and other forms of coercion to protect ourselves from human obstinacy and stupidity. We have to stop coddling the obstinate and stupid. We have used a lot of carrots, and they don’t work nearly well enough. We need sticks too.

Mandates (laws, punishment, coercion) have been an integral part of public health for centuries and have saved millions of lives.

This includes, but is not limited to, isolating people arriving in fourteenth-century Florence during the Black Death for 40 days (where our word “quarantine” comes from);  mandatory vaccination against smallpox in 1850s Britain, while some religious leaders inveighed against it as un-Godly; shutting off public water supplies carrying cholera (John Snow, 1854); outlawing spitting in public places in New York in the 1890s, when it was extremely widespread, to stop TB; forced quarantine of Typhoid Mary; mask mandates in the flu pandemic of 1918-20; mandatory childhood vaccinations for pertussis, diphtheria, measles, mumps, rubella, polio, etc. or you don’t go to school; mandatory meningitis vaccination or you don’t go to college; closing of bathhouses in the HIV epidemic; arresting and jailing people who deliberately spread HIV; severe restriction of smoking in public places and punitive taxation of tobacco products; infant car seats, seat belts, shoulder belts, and airbags; and cracking down hard on drunk driving.

All these coercions (“sticks”) and many more have stood up to legal, ethical, and historical scrutiny and have saved countless millions of lives. More and more institutions, governments, businesses, and schools will soon be mandating proof of vaccination and masking as the price of admission. You don’t want to do that, fine, you’re free to show me your back. And if you don’t, I’ll be free to call the police to keep you off my premises. And rest assured I will. In the end you will have to take your bad breath somewhere else.

On September 5, 2020, I wrote, “TETRIS [Testing, Tracing, and Isolation] is dead. So is the CDC. And the FDA. And 188,000 Americans.” (What a paltry number that seems now. If only we hadn’t insisted on more than tripling—and soon perhaps quadrupling—it.) I had high hopes for the new government in Washington. But a successful spring vaccination campaign had petered out by summer and, though daily jabs are rising again, they will not suffice.

On May 9th I wrote, “The country has fought the virus to a standstill on a hill some feared we couldn’t hold, and we fought it down the hill. If we can fight it down further off the high plateau, we might just win the war. As always of course, this involves not just vaccinations but other precautions, especially those against swapping air. But the situation in India is heart-breakingly bad and worsening by the day.”

Around that time, the CDC announced that vaccinated people could be unmasked indoors. They unraveled a year of education only to reverse themselves in July. While not as disastrous as last year’s CDC, this one is sending mixed messages that cost lives. If they had just looked at India and the U.K. in May, they would have known better than to ease up on masking.

But this is America. We don’t learn from other countries. So we now have the highest number of new cases in the world.

On the July 4th weekend, our new president took the opportunity to pretty much declare our independence from the virus. How very premature that was. As the second chart shows, we were just getting into the fourth, possibly worst wave.

As for the FDA, it’s also not dead, but some experts I trust say it’s moving far too slowly on full approval of vaccines that have been given to scores of millions of people with minimal safety concerns. The American Academy of Pediatrics has said the same about emergency use approval for children under 12.

If this is not an emergency, I don’t know what would be.

Bad News

  1. The Delta variant—which is so different that I’m inclined to call it “The Delta Virus,” although that’s technically wrong—now accounts for well over 90% of US cases. It is much more contagious than earlier strains (each infected person infects 5-10 others, as opposed to 1-2), makes people sicker, is easily contracted by vaccinated people (although it rarely sends them to the hospital or kills them), and affects young people, including children, more than earlier strains did. It will result in millions of cases of long COVID, which will burden our nation’s health for years, maybe decades, to come. As of today, Delta is the story.
  2. In states with low vaccination rates (and some have killer governors), Delta is overwhelming hospital systems. Georgia is one of the worst states. Children’s wards are filling up fast, and many children are very sick. Nurses are quitting, citing “compassion fatigue.” Don’t have a heart attack, an auto accident, or appendicitis in these states right now. There’s a likelihood that no one will be there for you. On January 5th, when there were a mere 350,000 American COVID deaths, I wrote about overwhelmed health care workers, “We will kick them until they are dead.” This seemed hyperbolic, but we did kill many, some by their own hand. We are about to do it again.
  3. No children are vaccinated, and children are getting COVID-19 in unprecedented numbers, around 100,000 in the past week (that we know of). Of these, roughly 1-2,000 will be hospitalized, and some 300 will die. An unknown number, somewhere between 2,000 and 20,000, will experience long COVID. As Dr. Daniel Griffin said in his latest podcast, if no adults got the virus we would consider this an extremely serious childhood illness. But many people still think it doesn’t affect children all that much because it affects adults more. Schools are opening across the land. CDC Director Wilensky keeps saying, “We know how to protect our children.” Sure, and if you gave each school a couple of million dollars they could implement the protections. Unless of course your governor forbids you to do that. Closures for quarantine are already occurring. And yes, I do get that children need to be in school; but I also get that their health needs protecting.
  4. This virus is evolving. Delta is not the last new variant we will see. Read my “interviews” with the virus (here and here) to learn more about “Sarsie’s” ongoing quest to follow the steps laid out by his Uncle Charlie Darwin, in order to advance his species in its struggle against ours. And heed the warning of Dr. Andrew Pekosz of Johns Hopkins University, which I quoted last time: by have a large unvaccinated population side by side with the vaccinated, we allow the virus to go back and forth and evolve new strains to overcome vaccine protection. It’s essentially the same way Pekosz creates—evolves—new strains of viruses in his laboratory. And of course, the world at large is mostly unvaccinated. We have imported new, increasingly contagious and/or virulent strains of SARS-CoV2 from several other countries, and we will continue to do so until we vaccinate the world.

Good News

  1. Daily vaccination rates are going up again, although they are still a small fraction of the numbers we saw in April and May. Still, we are slowly chipping away at the numbers of unvaccinated people, at least the minority of them who had access problems or who were persuadable. Slightly more than half of Americans are now fully vaccinated. The FDA says it may give full approval (as opposed to Emergency Use Approval) to some vaccines in September.
  2. There are plenty of vaccine supplies for our country, so in the not too distant future a third booster dose will be available. We already approved the third dose for immunocompromised people (around 3% of Americans), and Israel, Germany, and some other countries are already offering it to all older people. This will protect us as vaccine immunity inevitably wanes, on an unknown timetable.
  3. Monoclonal antibodies save many lives if administered to outpatients in the first ten days or so of an infection, although they are much less effective in hospitalized patients. They have kept many thousands of people out of the hospital. If you or a loved one has been exposed and is showing symptoms of COVID-19, get a test, and if you test positive, call your doctor or go to an emergency room to inquire about this treatment right away.
  4. Here is the best news of all, but be wary of it because it is a speculative projection. The Delta wave could go away as fast as it surged. This has happened in India and the UK, two extremely different countries in everything from vaccination to sanitation. Nobody knows why, but it is just possible that the same will happen here. Right now, though, we are very much in the rising portion of the surge, and that means rising cases, hospitalizations, and deaths, including children. Don’t become a statistic, or turn your loved ones into statistics, while we are waiting and hoping for the surge to peak. And remember Uncle Charlie Darwin; the virus has more tricks to play on us after the Delta surge is over.

We have vaccines. Many people refuse them, and masks as well. They have a deadly movement. They are not just ignorant, they combine ignorance with arrogance. They deny they have COVID while they are in the ICU dying of it, and while endangering the people taking care of them. After a year and a half, if some of those brilliant, brave caregivers walk off the wards and don’t come back, you won’t see them getting blame from me.

As for anti-vaxxers and anti-maskers: Keep your foul breath to yourself in your own dirty places. Blow it on your friends and relatives if they will stand for it. But keep away from decent Americans who care about our country and each other.

As  for the rest of us, rewind last year’s horror movie. We are watching it—no, we are in it—again.

Stay safe, and keep your loved ones safe. I will see some of you soon.

Dr. K

Planning to Party Big? Don’t. Party Small.

“Things are not good…Things are not good locally, things are not good nationally, things are not good globally…can you believe this, we’re two years in and the fire hose continues.”

            Daniel Griffin, MD, This Week in Virology podcast, December 16, 2021

“We still have a lot to learn about this variant, but everything we learn leaves me in a sense of awe of what it is doing, how it is doing it, and in addition to not only the physical damage but the psychological damage—coming after two years, coming at the time of the holiday season, coming when people are tired, believing that they have gone through the worst of it. And for some locations in this country you can’t imagine that after you’ve been through a three to four month surge of Delta, that now you have to deal with this… Just know that we’re all in this together… What we need right now is a plan to help us get through the next two to eight weeks…when we’re going to see this viral blizzard… This is the crisis. Right now is when we are going to be severely challenged in ways I don’t think we have been since the beginning of the pandemic.”

            Michael Osterholm, PhD, MPH, CIDRAP Podcast, University of Minnesota, December 22, 2021

“Y’know, it’s a really scary situation.”

            Mercedes Carnathon, PhD, Northwestern University School of Medicine, December 31, 2021,  Bloomberg TV

 

Dear Students,

A couple of months ago, when Georgia had passed the peak of the Delta surge and cases were not yet rising nationally, I was circling the park with my nine-year-old grandson, who was trying to get his sea legs on his new rollerblades. I was intermittently holding his hand and he was intermittently, beautifully tearing away from me. Something about pandemic precautions came up—he was doubly and I triply vaccinated—and he asked me if it was ever going to end. I told him about Delta’s decline and said, “Maybe in a couple of months more we’ll be getting back to normal.”

Without missing a beat he half-shouted, “I’ve heard that so many times!”

What was I going to say? It could only be, “Yeah, I’ve heard it too many times too.”

Cases in the US as of December 30, 2021

After posting about the pandemic regularly beginning March 2020, this is the first time I’ve written since August, when I posted an appraisal called, “Bad Breath.” I said I was done with coddling and cajoling the anti-vaxxers and anti-maskers and I called for urgent widespread mandates and shaming. I also highlighted the dismal failures of testing and tracing programs in our country. I only feel more strongly now.

I didn’t want to be the grinch that stole Thanksgiving or Christmas, and I was discouraged, like Ethan, because I’d heard about the end of this so many times, so I didn’t write. Delta’s course was predictable, with a sharp and deadly rise followed by an equally sharp fall, but not back to baseline. Perhaps my optimism roller-blading with Ethan would pan out and we would get a simmering level we could live with.

Booster shots were rolling out, 5-to12-year-olds were being vaccinated, monoclonal antibodies were helping for the (perfectly predictable) breakthrough infections in the vaccinated and the much more devastating infections in the Bad-Breath-ers, mostly obstinate morons who seemingly want to kill and die.

Then for our Thanksgiving present we got Omicron, which is in some ways putting us back to square one.

It’s taken about a month to learn the basics of this morph of the virus, which like Delta came from a part of the world with the dismally low vaccination rates the virus loves. It has over 20 mutations, unprecedented in previous versions. It spreads much, much faster than Delta, which itself had spread much faster than earlier versions. It is replacing Delta almost everywhere on the planet, and it is doubling in prevalence every 2 to 3 days. Existing vaccines are less effective against it, although they are still quite effective. Some monoclonal antibodies are effective, some aren’t.

It may cause fewer serious cases than previous morphs, but the infected population is so huge and rapidly growing that the very ill Omicron victims will overwhelm hospitals wherever it takes hold. Emergency room and ICU doctors and nurses in Michigan, Minnesota, Rhode Island, North Dakota, and other states are begging for more staff, including imploring colleagues who have quit, retired, and burned out to please, please come back.

These are still mostly Delta cases but Omicron will now swell the hospitalized Delta ranks and the overlap will extend to deaths. Funeral homes overwhelmed with Delta deaths will now have to stack the bodies higher with Omicron.

Those who know say the next two to eight weeks will be dominated by Omicron. Omicron cases, Omicron hospitalizations, Omicron deaths. The case fatality rates may be lower, but a smaller proportion of a very large number of cases is still a lot of deaths. The surge may come and (mostly) go in just a few weeks, as it has in South Africa. But they will be a heck of a few weeks.

After that, who knows? This virus is a genius at implementing Darwin’s theory of natural selection. It evolves every month, every week, every day.

Flights are being canceled, theaters and restaurants closing, universities—including ours, at least for January—going back online; some countries are slamming back into major lockdowns.

We have the same powers we have had for a year, some for two years: vaccinations, masking, social distancing, testing, tracing, and quarantine. We are just not doing any of them well. We are tired. I am tired. So do we want to slap ourselves and wake up and do the right thing, or do we want to spread disease and kill others or lay down and die ourselves?

Who is surging most now? 18 to 39-year-olds. Yes, they too go to the hospital. Yes, some die. Many more will spend their long lives with long Covid. Many will bear the guilt and the regret of having made others sick.

There is some good news. Oral monoclonal antibodies. A new oral antiviral that works. Boosters for 12 to 17-year-olds. Test-to-Stay programs have begun to keep schools open safely, and new data suggests that quarantines need not last 10 days, because with proper masking, 7 or 5 days may be sufficient.

Vaccinations are still rolling out in large numbers, but these are mostly third shots, which sensible people are lining up for, while progress in vaccinating the obstinate Bad-Breath-ers remains slow enough to bring hospitals and funeral homes to their knees and to ensure that we don’t see normal again for a long time. Scores of millions have failed to get even one dose of some of the best and safest vaccines known in the history of medicine. Their foul breath is a threat to you and those you love.

The President has finally announced that our country will step up free widespread testing. Half a billion tests will be available in late January. This means one or two tests for each person, coming to a spot near you after the Omicron surge is probably mostly over. Too little, too late. Kind of like experiencing a harsh December winter and ordering thousands of snowplows that will arrive in April.

So a couple of months after Ethan doubted my optimism, we are in what is probably the worst month of the pandemic.

I hope you had a good Thanksgiving, Christmas, and other holidays with your friends and family. I am writing this at noon on New Year’s Eve. If you are planning to party, party small. Ring in the new year—hoping it will be better than the old—with a small number of fully vaccinated people you really care about. And buckle up for a viral roller-coaster ride in the first month of ’22.

Sorry.

Happy New Year,

Dr. K

 

 

 

 

 

 

 

 

 

 

 

 

 

 

New Papers, and a Legacy

It’s been a long time since my last posting, which was still about the pandemic, my main topic for the previous two years. COVID-19 remains the third leading cause of US deaths (after Heart Disease and Cancer), with over 1,000 deaths a week. Accidental deaths, the fourth leading cause, log in at around 600 a week. Long COVID is common and a likely permanent burden. Late May was when I finally got COVID for the first time; I had been vaccinated five times and started on Paxlovid the first day I had symptoms. My case was blessedly mild and short, with no sign of long COVID so far.

But all told, people are tired of hearing about COVID-19, and it’s sort of, “sorry about those who still die, and sorry about the long COVID too, but it’s time to move on.” So I’ve stopped writing bulletins about it. Instead, in the past two years I’ve written what are probably career-capping review papers on topics that have interested me all my life. Here are the first three to be published.

Hunter-Gatherer Diets and Activity as a Model for Health Promotion:  Challenges, Responses, and Confirmations

Melvin Konner and S. Boyd Eaton, Evolutionary Anthropology 2022, 1-17. https://doi.org/10.1002/evan.21987.

This paper brings up to date the paradigm that Boyd Eaton (first author) and I tentatively fielded in the New England Journal of Medicine in 1985. Here we try to describe the science behind the internet “Paleo diet” hype, and answer our critics over four decades, conceding some challenges, rebutting others, and offering a modified version consistent with current knowledge. Simply stated, even a wide range of ancestral environments reveals a mismatch with our current ones, and since our genes evolved mainly in those environments, this discordance helps explain the chronic diseases that plague modern civilizations.

Is History the Same as Evolution? No. Is It Independent of Evolution? Certainly Not.

Melvin Konner, Evolutionary Psychology 20(1), 1-18, 2022. https://doi.org/10.1007/147049211069137.

The teacher who influenced me most in high school was Dora Venit, with whom I took two years of World History. She taught that a durable human nature could be inferred from what James Joyce called the “nightmare” of history. I believed that humans could be anything we want them to be. She was right. The sixty years of intervening research and theory in evolution, genes, brain, and mind—not to mention ongoing history— have proved that human nature is real, that it has a dark side, and that we may one day control it but it cannot be wished away. This paper shows why.

Nine Levels of Explanation: A Proposed Expansion of Tinbergen’s Four-Level Framework for Understanding the Causes of Behavior

Melvin Konner, Human Nature 32, 748-793, 2021. https://doi.org/10.1007/s12110-021-09414-8.

This is the most technical of the three papers. It stems from a model I have taught with for half a century. The great animal behaviorist Niko Tinbergen famously outlined four levels of explanation: evolution,  development, physiology, and environmental triggers. I broke evolution into phylogeny and natural selection; development into genetics, maturation, early environment effects, and general environmental shaping; physiology into slow processes like hormones and metabolism and fast ones like neural circuits; and the immediate triggers, for a total of nine levels of explanation. This paper sets out the model and gives examples.

These three papers may not be my last word on these subjects, but nobody lives forever, and I wouldn’t mind if these statements stood as my intellectual legacy. Given time enough and mind, I might like to add two more, one on the mechanisms of cultural transmission and one on hunter-gatherer childhood in the context of human evolution. We will see.

 

Letter to my students on COVID-19, April 5, 2020

“I skate to where the puck is going to be, not where it has been.”

Wayne Gretzky, widely viewed as the greatest hockey player of all time

Volunteers
Volunteer Georgia health professionals on their way to New York

Dear Students,

This is my outlook on the COVID-19 pandemic as of Sunday, April 5, 2020. I pay close attention to many sources of information and sift or curate them as best I can. This is a constantly changing situation and you should not rely too much on me. As I’ve told you before, you are the future leaders of our country and our world and you must ultimately lead, not follow. Please let me know if you have information that is different or if you think I’ve made a mistake.

In my favor, I have been talking to you about this virus since our class began in January and I updated you every Tuesday and Thursday until Emory closed. Since then, I’ve been updating you every few days to a week. I try hard to get this right and not to scare you too much. I did try to scare you when we talked about Ebola, polio, and the flu pandemic of 1918-19, and I always said the next pandemic was a matter of when, not if. I did not know that this was it when I first mentioned it in January, but now everyone knows.

Good News

  1. The CDC has found that homemade masks or bandanas covering your mouth and nose when you leave your house will help to slow the spread. First Lady Melania Trump endorsed this, as have many other opinion influencers. It is not a substitute for social distancing, hand washing, and other measures, and it would be disastrous if people thought it was. It is an added measure on top of all those things. It is designed mainly to protect others, not you. When you breathe, talk, laugh, cough, or sneeze into the mask, the cloth will capture half or more of the moisture, and that means half the viruses if you are infected but don’t have symptoms. (You can experiment by spraying water into a glass through a cloth; only some moisture gets through.) If you do have symptoms, you must assume you have COVID-19, and self-quarantine completely until you are symptom free for three days. Call your health professional for specific instructions, and don’t dial 911 unless you are short of breath. Do not try to buy medical-grade masks; you will be taking them away from medical professionals and you may cause some of them to become sick and die. An example of how to make a mask is here.
  2. Rapid tests for the virus itself are slowly becoming more available, and antibody tests for whether you have already had the virus but recovered will become available more slowly. Widespread testing will be a game changer for control of the American epidemic, as it has been in China, South Korea, and other places.
  3. We have real leaders in this country who are regularly speaking out: Gov. Andrew Cuomo of New York, (Republican) Gov. Larry Hogan of Maryland, Speaker Nancy Pelosi, Dr. Anthony Fauci, and others. They speak honestly and to the best of their ability accurately about how to beat the virus and mitigate its economic effects. They don’t just call it a war, they act like it’s a war. Governors of many states are bypassing a mostly passive Federal government and attempting to help each other.
  4. Fortunately not all states are experiencing this wave of the pandemic simultaneously, so people and equipment are beginning to move where they are most needed. New York has by far worst crisis, so it is calling loudly for help. The state of Oregon sent 140 ventilators* to New York; this is a small fraction of what will be needed but it is a very important symbol. Twenty-two thousand health professionals from other states have gone to New York to volunteer. New York is worst now, but it will be better first, probably within a few weeks. It will then have excess ventilators and professional volunteers to send to other states as the crest of the wave moves around the country.
  5. Studies of treatments are proceeding, including convalescent plasma donated by people who have recovered from COVID-19; antibodies derived from that blood fraction; hydroxychloroquine, which has antiviral action in lab studies (and which I took for years to prevent malaria when I was in Africa, and then again for years for a skin condition); azithromycin, an antibiotic with possible antiviral actions; and specific newer antiviral drugs. I am hopeful that one or more of these will prove effective within weeks to months, much sooner than we have a vaccine. However, it is immoral to take hydroxychloroquine for prevention or self-medication at this time; it is not proven to work, and it is in short supply for people with lupus and other autoimmune diseases, who desperately need it.

Bad News

  1. We have inadequate leadership at the very top in Washington, giving out inconsistent messaging, with no national strategy for supply and logistics for COVID-19 care—ventilators, N-95 masks, shields, gowns, and other personal protective equipment (PPE), and consistent only in predicting unrealistic time frames for ending the pandemic and getting the country back to work. The government in Washington has declined to order a national lockdown for social distancing, to mobilize the armed forces to help the hospitals and the states, to order manufacturers to make desperately needed ventilators and PPE, or even to set an example for our people in things like social distancing and wearing of masks.
  2. The hospitals in New York, Detroit, and New Orleans are already overwhelmed, but the word overwhelmed will be given new meaning in those cities in the next week or two. Large numbers of health professionals, police officers, firefighters, EMTs, and other first responders are already sick and more will be. Many who are not sick are crying every day. Some, understandably, are quitting in fear of bringing this deadly virus home to their families. Similar effects will be felt in other cities throughout the country over the coming weeks. Hospitals built out in convention centers and mega-tents were ready but almost empty for days until they were allowed to take COVID-19 patients. U.S. Navy hospital ships are almost empty because they still will not take COVID-19 patients.
  3. Many people still do not take social distancing seriously. Gov. Kemp of Georgia reopened the beaches and parks in our state after closing them. In many states social distancing is not enforced and not likely to be until it is too late. According to current official government projections, the United States will see a minimum of 100,000 to 240,000 deaths if we strictly follow social distancing and other precautions. We are not yet doing that. The number of deaths in the U.S. passed 9,000 today and is doubling approximately every 3 days, which would put us over a hundred thousand in 10 days or so. If we act properly and lengthen the doubling time to 4, 5, or 6 days, it will take longer to get there. But bear in mind that the increase continues to be exponential at those longer doubling times.
  4. The Congress, especially the Senate, has offered too little too late to offset much of the disastrous economic effects of the pandemic, and as usual the poor and minorities will suffer most of the consequences, including worsening health, inadequate access to care, and premature and preventable death. Poor families have the greatest psychological vulnerability to the post-traumatic effects of this experience. Families at all socioeconomic levels have seen increases in domestic violence.
  5. Something that I have been reluctant to mention in these announcements, but which more and more authorities are considering, is the possibility that this is only the first wave. The flu pandemic of 1918-1919 had three waves. We must watch closely what happens in China, South Korea, and Japan as they declare the virus beaten and relax social restrictions. The virus is currently spreading in the Southern Hemisphere of the planet and may get worse in their winter, even as it may get better at the same time in our summer. I wish I could promise you that Emory will have live classes again in the fall.

We all need to adapt to situations that are psychologically abnormal. You can do it. Facetime or Skype with your friends and family. Have Zoom rituals, club meetings, and parties. Go outside with a homemade mask and run or walk while social distancing. Watch those movies you always wanted to see, binge-watch those hot TV series, even maybe read a book that’s not assigned for school.

Whether we have one wave or more, we will in time have treatments and a vaccine. Those who have had the virus and recovered will slowly begin normal life again. They will help restart the economy. This will end.

Your great-grandparents lived through World War I and the flu pandemic of 1918-1919. Your grandparents lived through the Great Depression and World War II. Your parents lived through the Vietnam War, 9/11, terror of terrorism, and the Great Recession. If any of your generations were in the developing world, they saw and lived through other terrible things. You can live through this. Just do what you’re supposed to do and help others as best you can. Do your homework and study. Come to class online. You are still a college student and you still have great dreams. You will live to see your dreams come true.

Dr. K

  • A note on terminology: I said in an earlier announcement that a ventilator is the same as a respirator. The Medline Plus dictionary of the U.S. National Library of Medicine says, “A ventilator is a machine that breathes for you or helps you breathe. It is also called a breathing machine or respirator.” However, other authorities use the word “respirator” to mean something entirely different, namely the top-flight hospital grade N-95 masks that screen out at least 95 percent of airborne particles not carried in oil. Because of the two meanings of “respirator,” I will avoid this word going forward. COVID-19 is the name of the disease caused by one of many coronaviruses; this coronavirus is designated SARS-COV-2. However, we all know that today “coronavirus” or even just “the virus” will pretty much get the message across.

Blowback 2

I said in my last posting that I expected Women After All to offend four groups. The biggest and most vulgar response has been from the “men’s rights” movement—really Quavering Male Chauvinists (QMCs) who can’t wrap their minds around the fact that women are pushing the boot off their neck and even starting to twist the foot around the ankle. Steady for the toppling, boys. Don’t hit the deck too hard.

The second group has been much more polite than the QMCs but no less critical: feminists who see my claims as a warmed-over, old-style, pseudoscientific male chauvinism; worse, Read more

Women’s Suffrage is 95 Years Old!

 

o-ELIZABETH-CADY-STANTON-edit
Elizabeth Cady Stanton in her proper place

It’s a great day to celebrate women’s movements past and present, but does feminism require the belief that women are basically like men?

This was at least an implicit claim of Second Wave feminists, modeled on prior movements for ethnic and racial equality. Read more

“Mom and Mommy, Where Do Babies Come From?”

Venus symbolsThe 1989 book, Heather Has Two Mommies, normalized for my kids the idea that two women could care for a child and create a fine family. The controversy it met with seemed increasingly quaint as research showed that kids like Heather grow up very much like average children, although they are less homophobic.

Even quainter now seems the battle over the first “test-tube baby.” Louise Brown, born in 1978, was hailed in headlines as “Superbabe” and “The Lovely Louise,” but she also met with many negative expectations. Yet in 2010 Robert Edwards shared the Nobel Prize for the work that led to her birth, celebrating with Ms. Brown and her own son. Today five million people conceived in this way walk among us, indistinguishable except in the luck of their existence.

But suppose these two lines of research could be joined. Suppose Heather had two biological mothers—because one of their eggs was fertilized with the DNA  of the other. Since the offspring of such a union could have only X chromosomes, Read more

The Case that Clinched the Zika-Brain Connection

Normal male fetus EKP
Normal fetus

Rita Levi-Montalcini, the first Nobel laureate to reach 100, graduated from the Turin medical school in 1936, and soon started working on the developing nervous system. Two years later, when Mussolini barred Jews from faculties, she set up a lab in her bedroom—such was her passion for understanding brain growth, for discoveries that might someday help prevent brain defects.

I thought of her on April 13th, when the CDC released its statement confirming that Zika causes microcephaly. It seems they were awaiting Read more

Charles Darwin’s Happy Birthday

As we mark Charles Darwin’s birthday on February 12th, our culture is riding a wave that should take us back to his theory. The #MeToo and #TimesUp movements are the crest of the wave, which may represent a turning point against men’s chronic exploitation of women. It’s one aspect of the decline of male supremacy predicted and fought for by Elizabeth Cady Stanton, the pioneering women’s rights activist born just a few years after Darwin.

Stanton, like Darwin, was a realist when it came to gender differences. She thought that some were intrinsic and fundamental, but that these were to women’s advantage. Indeed, in a powerful 1869 speech, she held that the strongest argument for women’s equality was “the difference between man and woman.”

Read more

The Day After

Note: This appeared as one of my contributions last week to a private email group including a number of lawyers. Three of them, including a retired Democratic Congressional Representative, endorsed my proposals. A fourth, a former Republican member of the Georgia State House, was “appalled.” The photo was included in my email. The proposal was emailed to the group Thursday, October 5, 2018, and I haven’t altered it for this posting.

Three illegitimate “Justices,” now one third of the court and three fifths of the ultra-right majority

Here’s what I think will and should happen the day after Kavanaugh is confirmed: Read more

Summary I sent my students on Wednesday, with preface/update Saturday

Photo by CDC on Unsplash

Since Wednesday the number of identified cases in the US has gone from 3,500 to 20,000, partly because of increased testing. Testing remains woefully inadequate so the real number of cases must be much higher. The US deaths have passed 200. More young people are sick and dying. Mardi Gras (Feb. 26) made New Orleans a hot spot and Carnival encouraged transmission throughout Latin America. Spring Break on Miami Beach will have a similar effect. US hospitals are begging for supplies, personal protective equipment (PPE), and ventilators (respirators),  and the government in Washington is so far not demanding that factories repurpose to produce these items. Barring drastic action, hospitals will be overwhelmed in two or three weeks, heroic health professionals will be dying at higher rates, and remaining doctors will have to decide who lives and who dies. Don’t become one of those casualties. Protect them, yourself, and those around you.

Use this source for daily future updates, interactive maps, and reliable information in days to come: https://www.nytimes.com

COVID -19 UPDATES

WEDNESDAY March 18, 2020, 8am

Here is what has changed in the past week:

  1. The WHO declared a worldwide pandemic last Wednesday
  2. Italy is probably the worst hit, with hospitals completely overwhelmed; Iran may be worse, but we have no reliable information from there.
  3. France announced a nationwide lockdown two days ago, noting a rise in severe cases in young people around the country.
  4. The U.S. President announced a national emergency & discouraged gatherings of more than 10 people.
  5. Testing became more widespread, but still lags far behind that in other countries.
  6. Testing proved that the virus is being spread by people who have no symptoms, mainly the young; the young may not know it, but they are killing the old.
  7. Stock markets crashed & economies shut down in many countries and U.S. states.

Here is where we are this morning:

  1. Many leading U.S. hospitals are seeing a dramatic rise in cases and expect to be overwhelmed soon.
  2. Many governors are calling for U.S. army and other national aid that isn’t there yet.
  3. Approximately 3,500 cases are identified in the U.S.; experts say there are 10 unidentified cases for every identified one, so the real number is around 35,000.
  4. Despite lockdown in many areas & the closing of restaurants, bars, gyms, theaters, sports events, etc. by law, experts agree social distancing is far less than needed.
  5. Hospitals are running out of supplies needed to protect health care workers.
  6. Ventilators (respirators; breathing machines) cannot be manufactured fast enough to keep up with the need; doctors will have to decide who will get treatment & who will be let go of, just like in a war zone.
  7. Doctors and nurses are getting the virus from their patients and going home; they cannot be replaced, even if machines and supplies can.
  8. The Secretary of the Treasury now warns that U.S. unemployment can go from 3 to 20 percent.
  9. Economists widely agree that we are in or are “sliding into” a recession which cannot be avoided, and which could be worse than the Great Recession of 2008.
  10. No one can tell us how long this will last or how bad it will get.
  11. Epidemics in warm countries seem to disconfirm the hypothesis that summer weather reduces the number of cases.

My advice to you right now:

  1. Stay home and urge anyone in your family who is not performing a vital service (hospital work, food and medicine deliveries, grocery stores, pharmacies) to stay home too.
  2. Maintain contact with friends and family by phone, Skype, etc.
  3. If you must leave your home, stay six feet away from any other person.
  4. If you have traveled anywhere by air, train, or bus, stay away from your grandparents & all older people for at least 14 days. Stay in touch with older people by phone & have food and medicine delivered to them if you can.
  5. Develop, & urge everyone you know to develop, skills for working, preventing isolation & sadness, & being entertained at home. If you must get out, walk in the woods or in a park where you can avoid getting within 6 feet of another person. If you have to walk the dog, use the same precautions.
  6. If you are coughing & sneezing without a fever, stay home & call your doctor. Do not just show up at a medical office or emergency room. Get a test if you can find one.
  7. If you develop a fever and feel very weak, call 911.
  8. If you are in the U.S., check the CDC web page every day:

https://www.cdc.gov/coronavirus/2019-ncov/cases-updates/cases-in-us.html?CDC_AA_refVal=https%3A%2F%2Fwww.cdc.gov%2Fcoronavirus%2F2019-ncov%2Fcases-in-us.html (Links to an external site.)

  1. Wherever you are, check your national, state or provincial, and city or local health department websites every day.
  2. Wash your hands for 20 seconds many times a day; avoid touching your face as much as possible; frequently wipe down all surfaces from cell phones to kitchen counters with alcohol wipes; gloves & masks are in short supply, so use them wisely.

(Note: the photo above shows viruses in the coronavirus family, not SARS-COV-2, the causal agent of COVID-19, currently pandemic.)

How an Anthropologist Looks at All This

A doctor friend of mind sent me the following question last week: “Is your perspective  on the pandemic and the associated chaos different based on your knowledge of anthropology and medicine? If so how?” Here’s my answer:

Thanks very much for the question, Michael. I think part of the answer is that I think about behavior, culture, and evolution very prominently. In fact my big class right now is called “Disease & Human Behavior.” Some of my perspective would overlap with a public health perspective. One Scientific American article I assign in this class was written years ago, and asks: “Are We Ready for the Next Pandemic?” Answer: No.

But in no particular order:
The difference between the outbreaks in Singapore and Hong Kong vs. the disastrous one in Italy (or the one here soon) could have something to do with genetics, but I would say it’s mainly culture. That includes government, but it also includes a more collectivist culture in which people respect authority, follow orders, tend to fear others’ opinions, and act for the common good—not necessarily out of the goodness of their hearts, but because of deeply engrained habits they were raised in.
By contrast, look at the photo in the article linked here.
A number of US cities have done the “Behave Better Please” approach with little result, then issued decrees and laws, with a bit more result (most bars stayed open anyway), and then finally to enforcement. China blundered with initial coverups (one result of autocracy), but when they switched they came down hard with enforcement. I value democracy, but I would like to see Miami beach emptied by the National Guard if necessary. Today.
I just don’t believe that much in people’s intelligence and good will, I believe in their impulsiveness and selfishness. That I suppose is part of my anthropological outlook on human nature. “Drive Safely” signs are great, but seat belts are better, and air bags are best because they require no human cooperation. Voluntary social distancing is great, but enforced social distancing (quarantines, closures, etc.) is necessary eventually, and vaccination (including enforced vaccination for the idiots who will no doubt resist it) will be much better still.
I could say a lot of things about our government’s lack of preparedness and collossal failures of leadership in the past two months, but y’all see that clearly without anthropology. I expect the worst, they didn’t, we get screwed.
In terms of evolution, I would say two things.
First, new emerging viruses are guaranteed, an evolutionary opportunity for the virus that it can’t pass up, exacerbated by deforestation and intimacy between humans and wild animals in some places. The “emerging” part is when they evolve the ability to go from animals to humans. Then it’s to their great advantage to evolve to human-to-human transmissibility, also pretty much guaranteed sooner or later. Then there are interesting evolutionary questions for the virus.
Should I become airborne? Usually yes, but not if you’re universally deadly—your whole evolutionary project will be over in no time. Should I become very virulent? Usually no, because I want my human host to live long enough to spread me. Probably I should evolve a latency period (very long with HIV) or a spectrum of effects that includes asymptomatic people, like COVID-19. Ebola doesn’t have to be airborne even though it’s deadly because dead people can transmit it, especially in certain cultural contexts. Polio doesn’t have to be airborne because fecal-oral transmission is so effective in poor crowded environments. Malaria does very nicely with mosquitos, and there are 3 levels of evolution: the parasite evolves resistance to drugs, the mosquitos evolve resistance to pesticides, and humans evolved resistance via sickle cell & thalassemia genes.
Which brings me to the second evolutionary point, about humans. We spent most of our evolution in dispersed populations with a burden of worms and other parasites, plus a probably low level of percolating bacteria and viruses. Increased population with the evolution of “civilization”—high population densities—meant that tremendous new epidemic possibilities emerged. Poverty in stratified societies created an underclass of more vulnerable people. See the second link below for how this is working/will work in COVID-19. Finally, we evolve to our most civilized level, where bulldozing forests creates constant new evolutionary opportunities for microbes, and international air travel takes them wherever they want to go.
More than you wanted to know. But that’s how I think. Hope for the best, but for many reasons expect and prepare for the worst. This will not be the last pandemic of course. Will we be more ready for the next one? Anthropological answer: probably not. It requires foresight, which we humans are not good at. Instead, we discount the future and go with the hormonal flow.
See y’all on Miami Beach this weekend? In this group, I hope and trust not…
Mel

COVID-19 message to my students this evening

Hi all,

I thought that our session yesterday was quite good and loved the chat contributions in the first

Photo by CDC on Unsplash

part of the class. I have thought most though about this comment from Garrett:

00:28:15 Garrett Canterbury: “I think the issue that Trump and other officials, including state and local, are struggling with is that at what point is putting millions of people out of work worth saving X amount of lives. I think the goal should be to move to the South Korean model where there is loads of testing, the economy is mostly re-opened, and the sick and vulnerable are isolating while the healthy are back to work.”

This is to me a vital question. I heard people who should know better say on TV in the past day or two that to weigh the economic consequences of social distancing and lockdown against the lifesaving public health measures many are taking is irrelevant or unethical.

There are things that I think are unethical to debate. This is not one of them. Take a look at this short column a couple of days ago by Tom Friedman, a liberal and no supporter of Trump: https://www.nytimes.com/2020/03/22/opinion/coronavirus-economy.html (Links to an external site.)

What is happening to our economy now, what will happen soon, really really hurts people. It will kill people.

But Garrett is not suggesting we do nothing. He is suggesting the South Korea model, which means social distancing based on testing, with one eye on getting people back to work. Here’s what I have to say about the balance:

  1. We must get the economy going again as soon as we safely can.

  2. The projected one to two million American deaths without strong social distancing would also tank the economy and rip the hearts out of millions of families. The overwhelming of hospitals and deaths of health care workers would do the same.

  3. We have missed the boat on testing at the right stage of the epidemic the way South Korea did, and we have missed the boat on timely mask and ventilator manufacturing BUT…

  4. We are where we are and we have to look forward. We must social distance to flatten the curve or this will destroy our hospitals, killing nurses, doctors, and other first responders.

  5. We have to hugely ramp up the things we haven’t done and still aren’t doing nearly well enough. The first is testing. We need tens of millions of tests, not tens of thousands, to follow the South Korean model as Garrett rightly suggests. We need two kinds of tests: one to find and isolate the currently infected, aggressively testing those they have been in contact with; and another one to identify those (now perhaps in the millions) who have had the virus and have successfully recovered. Those people are almost certainly no danger to anyone and can go back to work, socialize, and help others.

  6. We need manufacturing that is on a war footing. In World War II we did not ask auto makers to please make tanks. We ordered them to make tanks—and planes and helmets and bullets and uniforms. And by the way that project put a lot of people to work and saved the economy, as well as winning the war.

  7. We do not have medicine for COVID-19, but we have medicine for the economy, and it is being applied. The Federal Reserve bank has reduced interest rates to near-zero and is pumping unprecedented trillions into the economy. Even the dithering Congress has agreed to pass a two trillion dollar stimulus package and will do more. We know how to treat the economy when it is sick. Yesterday the Dow had its biggest increase since 1933, and another increase today. People will get paychecks in the mail that will be too small, but will help. Companies will get too much, but will be somewhat rewarded at least for not firing people and giving them paid sick leave.

McKenzie and others yesterday in saying we have the wrong kind of health care system to handle all this right. We also have the wrong kind of economy and a shameful lack of preparation. (See the previously assigned 2005 Scientific American article, “Preparing for the Next Pandemic.”  We didn’t.) But we are where we are. Go to this website to see what will happen to hospitals in your state under varying degrees of social distancing. Click on your state and see the date on which, with inadequate social distancing, your hospitals will be overwhelmed: https://covidactnow.org/ (Links to an external site.)

And please please learn the meaning of the word several of you supplied yesterday: exponential. We have more deaths from auto accidents right now, but they are not increasing exponentially. We have more deaths from seasonal flu, and this is a bad season, but they are not increasing exponentially. Our hospitals take care of patients in danger of dying from those two things every day, every year. They cannot take care of an exponentially increasing number of victims of COVID-19.

Take care of yourselves and protect yourself and others. Flatten the curve.

Dr. K

PS: If you’re curious to see how long I’ve been fighting for a better health care system, go here: https://www.melvinkonner.com/new-york-times-op-ed-page-columns/

What I told my students this evening about COVID-19

Dear students:

“Facts are empowering. Even when the facts are discouraging, not knowing the facts is worse.” — Gov. Andrew Cuomo, New York

 

Data as of March 30, 2020

 

 

Good news:

Some very good things have happened, although very belatedly, since last week:

  1. As of yesterday, President Trump accepted the advice he has been getting for over a month from experts, about the size of the pandemic (at least 100,000 deaths at best), the inadvisability of having different rules for different parts of the US, and the need to extend rigorous social distancing at least until April 30th. He is no longer calling for the churches to be full on Easter Sunday (April 12th) as he did last week.
  2. Diagnostic tests that report results in 5 to 15 minutes have been developed by several laboratories; they are also easier and safer to perform than previous tests. It is possible that massive increases in testing will happen in the next week or two. Promising tests for whether you have had the virus should be available soon. Human (Phase 2) studies are looking at treatments (antibodies from recovered patients, antiviral drugs, etc.) and at vaccine candidates. These are months to over a year away.
  3. The navy hospital ship Comfort has docked today in New York City with 1000 hospital beds and 1200 trained health care professionals. They will take non-COVID-19 patients, allowing hospitals to focus on those with the virus and reduce the spread to other patients. Smaller ships are going to New Orleans and elsewhere. Quite good hospitals have been or are being built in huge convention centers, parks, and fairgrounds in a number of hard-hit cities. Some of these will take COVID-19 patients.
  4. The logistics (supply chain) of ventilators, N95 masks, and other personal protective equipment (PPE) was brought under a nationwide command, including: manufacturing many more of all these; making sure they get where they are most needed, when they are most needed; importing large numbers of needed items from across the world; and figuring out how to sterilize and otherwise safely use them for more than one patient simultaneously (ventilators) or in succession (PPE).
  5. Increasingly effective social distancing throughout the country.

It might be true to say that all these things are “too little, too late,” but I prefer to put the emphasis on “better late than never.” In fact, much better late than never.

Bad news:

  1. The President has continued to spread misinformation that, like his previous misinformation, may be deadly, and to do other things that put people in danger. Yesterday he said it was a mystery how hospitals that used to need 10,000 to 20,000 masks now need 300,000, and strongly suggested something “worse than hoarding” as the reason. Here is the reason: doctors who routinely needed masks for 1 of the 20 patients on their shift now need masks for 19 out of 20. You do the math. Two days ago, he said he had told the Vice President not to return calls from Michigan’s governor because he doesn’t like the way she talks about him. How many people will die in Detroit in the next week or two because of those delays?
  2. Massive widespread testing both for having the virus now and for having had it and gotten over it are needed right now and not yet available.
  3. Military resources for treatment, logistics, and public health measures are still woefully underused. If you say it’s a war, act like it’s a war.
  4. Command and control measures at Federal government disposal for increasing the manufacture and distribution of needed equipment have still not been properly deployed. Many hospitals are already overwhelmed, and more will be. If you say it’s a war… (see above).
  5. Social distancing remains spotty in many places. Some houses of worship (not most) are holding crowded live services. Dense groups of young people are hiking together in Georgia national parks. Some entertainers are holding concerts and encouraging rebellion. Experts say if we do everything right, we can keep the deaths in the US to as few as 100,000-200,000. We are not doing everything right.

We were supposed to “flatten the curve” to save the health care system. Now the peak is coming April 15th or so in the first states. The overwhelming of hospitals will start then (actually, it’s started already) and spread like a wave throughout the country. We must proceed with mitigation and be as ready as we can for those peaks.

Check out the graph. This is what “American Exceptionalism” means today.

See you tomorrow,

Dr. K

 

 

 

Blowback

Women After All cover hi res reducedMy new book—Women After All: Sex, Evolution, and the End of Male Supremacy, published by Norton on March 9th—has produced some highly predictable, in fact predicted, reactions.

I’d written on p. 17, “this book will have something to offend almost everyone.” Three of the four groups I mentioned specifically were those (not all) feminists who deny that any important things about men’s and women’s behavior are influenced by biology; discouraged women who think I exaggerate the pace of change; and of course, the flat-earthers who think evolution didn’t happen and won’t read past the subtitle.

But the nastiest blowback by far has been from men. The first wave  Read more

The Virus Has a Vote: Update to Students April 12, 2020

“Whatever happens over the summer, this virus is going to be back with us in the fall. And so we have to prepare for the fall as well.” Dr. Ashish Jha, Harvard School of Public Health, 4-5-20
“What we are doing is working, and therefore we need to keep doing it.” Dr. Anthony Fauci, 4-9-20
“If we are not expecting a second wave, or a mutation of this virus, then we have learned nothing.” Gov. Andrew Cuomo, 4-10-20
“The worst thing that can happen is we make a misstep and we let our emotions get ahead of our logic and facts and we go through this again in any manner shape or form.” Gov. Cuomo, 4-11-20
“Well you know I did just finish a 24 hour shift overnight so forgive me if I’m a little brutally honest, but at some point we have to accept that we open up the economy and X amount of people are going to die and the question is what is that number and what are we willing to accept. You know as we flatten the curve, if we don’t time this right there may be another spike, and this won’t be flattening the curve, it will be flattening the roller coaster. So myself, the front line health providers, we don’t want to flatten this curve, we want to crush this curve.” Dr. Sudip Bose, Emergency Physician & Iraq War hero, 4-11-20

These quotes from experts and leaders over the past week, in order of when they were said, are more eloquent in their message than I could be. The so-called first law of medicine, If it’s working, keep doing it, is operating here. But so is the first law of life: Hope for the best, but prepare for the worst.

Good News

There is a lot of good news to celebrate this Easter Sunday, and it’s more than just hope.

  1. New York, by far the worst hotspot in the U.S., has convincingly passed its peak of intubations, and that means the worst of the worst is over for New York. Daily death rates continue to be tragically high, but they are a lagging indicator and they too are plateauing. The overwhelming of hospitals has happened, but it may not get worse.
  2. Christopher Murray’s model, often cited by the Federal government task force, from the University of Washington’s Institute for Health Metrics and Evaluation (IHME), is now projecting a total of 61,545 deaths for the U.S., down from 100,000 or more projected just a few weeks ago.
  3. The West Coast states, notably Washington where the first U.S. cases were, but also Oregon and enormous California, have done an amazing job of keeping this in control from the beginning.
  4. Clinical trials of convalescent plasma, antibodies from same, hydroxychloroquine, remdesivir (an antiviral), and other potential treatments are proceeding. Some are being prescribed under the principle of “compassionate drug use” approved by the Food and Drug Administration (FDA), although their effectiveness is a long way from proven. Many promising vaccine candidates are under study.
  5. Testing is being gradually ramped up, with viral testing (to see if you have it) up to between 100,000 and 200,000 a day. Antibody testing (to see if you’ve had it) has begun in some areas.
  6. Some top Washington officials say the country may go back to normal activity on May 1. Others see a carefully planned phase-in of normal activity over the subsequent weeks to months, guided by testing, testing, testing.

Bad News

  1. Many parts of the country are behind New York on the curve. Some will succeed as the West Coast states have. Others, where social distancing has not been followed, may be disaster zones.
  2. When you read the fine print on the IHME website, you find that they are only claiming to model “the first wave” of the pandemic. They have nothing to say about future waves. (Below I discuss a more realistic conceptual model that is speculative but helps me to think about what our longer-term future may look like.)
  3. Very few states have done what the West Coast states have done from the outset, and some have done the opposite. If Los Angeles relaxes its controls too soon, it is projected to look like New York by late summer.
  4. Early results from small clinical trials have concluded that it is ethical to continue them. This means two things: a) they are not doing obvious harm to volunteers; b) they are not so dramatically effective that the trials have to be stopped so that everyone gets the treatment and no one gets a sugar pill. They could still turn out to be useful, or have bad side effects, or both. If a vaccine is available in 12 to 18 months, it will be by far the fastest vaccine development time for any novel virus.
  5. Testing remains woefully inadequate across the board, and claims to the contrary are demonstrably false. There are not enough viral tests for health workers at risk, much less for a suitable sample of Americans. If we do 200,000 tests a day, it will take half a year to test 10% of the country. Antibody tests, which if they work well enough can probably clear many people to go back to normal activity, have barely begun.
  6. The IHME models, which are the ones quoted by and guiding Federal government officials, are premised on current strict levels of social distancing continuing through May. Earlier relaxation of vigilance is projected to increase deaths, as mentioned by Dr. Sudip Bose, the emergency physician and war hero quoted above.

The model in the graph below (or attached) is a conceptual rather than precisely mathematical model, and I have problems with it, but I think it broadly shows how we should be thinking. It comes from an odd place, namely Morgan Stanley investment research (thanks to Dr. Craig Hadley for alerting me to it; the head of the unit that produced the graph is Matthew Harrison). It has errors (it assumes that children can’t pass the virus on and it is too optimistic about the timetable for a vaccine). It may have been updated today, and I will let you know if I can access it. Meanwhile, it is conceptually valuable in showing us how to think about how this will unfold. You know I consider you leaders. Use your excellent brains to navigate uncertainty, especially when so much depends on how we steer.

Note: I made a mistake in an earlier announcement about the effect of the Great Recession on life expectancy. It actually increased life expectancy and reduced mortality at all ages. The improvement was due to decreased deaths from heart disease, auto accidents, and homicides, among other causes. There were increases in opioid related deaths and suicides but these did not offset the improvements. Improved life expectancy in the Great Recession has been shown in both the U.S. and Europe. A similar paradoxical effect has been clearly shown for the Great Depression of the 1930s and is probably true of other economic downturns. I did see one study claiming to show the opposite, and that’s what I expected, but the weight of evidence goes against my expectation. That’s science for you.

Stay safe, Dr. K

 

 

Do I Have It, Did I Have It, Am I Recovered, Am I Immune?

“A house divided against itself cannot stand.” Gov Andrew Cuomo, quoting Abraham Lincoln, quoting Matthew 12:25 and Mark 3:25

“The paranoia of stupidity is always the worst, since its fear of destruction by intelligence is reasonable.” American playwright Arthur Miller

“You can’t always get what you wa-ant. But if you try some time, you just might find, you get what you need.” The Rolling Stones, from home, yesterday

Dear Students,

A book called The Starfish and the Spider, published in 2006, was about the strength of decentralized organizations. The metaphor is not ideal, but if a spider loses its leg, it’s crippled, and if it loses its head, it’s done for. A starfish can regenerate its cut-off leg, and in some species the leg can regenerate the whole starfish. The authors argue for the strength of acephalous or headless organizations. Wikipedia and the Internet are examples. The Aztecs quickly fell to the Spanish conquerors, but the dispersed, leaderless Apache Indian tribe resisted them for centuries.

Good News

  1. The resilience of the United States as a headless organization is being tested as never before, at least since the American Revolution. How many times have we now heard, “It’s up to the governors”? Well, guess what? The governors have gotten the message! They are fighting the would-be COVID conqueror with the resilience of a headless organization. This includes Republican Governors Larry Hogan (Maryland), Mike DeWine (Ohio), and Charlie Baker (Massachusetts), and Democratic Governors Andrew Cuomo (New York), Gretchen Whitmer (Michigan), and Gavin Newsome (California). They keep asking for Federal help, and people are dying for lack of it, but they no longer expect it from the executive branch, and they are getting the job done.
  2. The Congress is another leg of the starfish. It is drafting legislation to provide funds for millions of free tests a week, both for the virus (you have the disease) and for the antibodies (you had it). New York State, which accounts for almost half the U.S. cases and deaths so far, is pretty clearly over the worst. Following Germany and other countries that understand science, New York will implement massive random antibody testing to get a snapshot of how the virus spread through its population, calculate real mortality rates, and begin finding out who may be immune.
  3. As for treatment, hydroxychloroquine has not yet worked but is still under study, as is the antiviral remdesevir, which looks much more promising. The use of convalescent plasma (from recovered patients) is also being aggressively studied. All three are in short supply, but doctors can request any of them for individual patients outside of controlled trials. Vaccines are in development in labs throughout the world.
  4. Stay-at-home measures, social distancing, obsessive handwashing, masks, and other preventive strategies have dampened the curve in many states and in the U.S. as a whole, although they have not crushed the curve anywhere. Some states will begin returning to normal life in stages recommended this week by the Coronavirus Task Force, starting as early as the first week of May. Every person who voluntarily stayed at home has been part of the headless organization defeating the virus and saving literally countless lives.
  5. Recessions and even depression do not costs lives, but contrary to intuition they save lives. This has been shown for the Great Depression, the Great Recession and other downturns. Deaths from auto and other accidents, heart disease, lung disease, and infant mortality all go down. Deaths from suicide and addiction probably go up, but overall deaths decline. Obviously if a recession coincides with a pandemic, a lot of people are going to die from the pandemic, but the idea that recession itself will cost lives in the aggregate is false.
  6. Lady Gaga and Global Citizen yesterday presented One World: Together at Home, a two-hour concert from the homes of an astounding array of huge celebrities (see highlights here). As of today they have raised $128 million for WHO, the UN, and other headless organizations fighting the virus, some abandoned by the United States.

Bad News

  1. However successful the states are on the headless starfish model, the absence of Federal funds, especially for testing, will hamper their response and cost lives. Some states are opening up too much too soon and are ignoring the fact that unknown numbers of their citizens are infected and spreading the virus without having symptoms. New research shows that sneeze droplets travel much farther than 6 feet.
  2. There is another, negative aspect to headless organization emerging: large, angry protest movements both denigrating and flaunting public health measures. This has been framed in terms of “freedom” and “liberation” and encouraged from what is left of our country’s head, but the result is massive dense crowds of people with no protection against each other. This will have an effect similar to that of Mardi Gras in Louisiana.
  3. Hydroxychloroquine trials have been disappointing so far, both because of lack of positive effect and cardiac side effects. Compassionate use of remdesivir has been more promising but it also has side effects and controlled trials must be completed before it is widely used. Ditto for convalescent plasma. Many vaccine experts doubt the timetable we have been encouraged to think about, which is 12 to 18 months.
  4. Twenty public health experts interviewed for a long article in today’s New York Times have urged us to prepare for return of the virus after the first wave, and to see this as a process that may take years. Scientists have criticized the main model that the Federal government is relying on for its normalization plan, while others have provided more plausible models that see the virus returning in multiple waves.
  5. Congress is at this writing deadlocked on major measures to provide funds for serious testing and alleviate economic suffering. Some health measures improve in recessions, but mental health measures are probably not among them, despite stress reduction for some people.
  6. The impacts of poverty, racial oppression, age, and gender are clear in this pandemic as in so many diseases. Poor people, African-Americans, and the elderly are prime targets due to preexisting untreated conditions. Women are the majority in front-line occupations, although men are more like to get sick and die. Nothing will change in the long run without changes in our society and our health care system.

“Do I have it, Did I have it, Am I recovered, Am I Immune?” These are the critical questions that we cannot yet answer. Washington says there are plenty of test kits, but the governors (both parties) say there are no swabs to do the tests and no reagents for the labs to do the analysis. Imagine that you can sit for the SAT or the MCAT, but you don’t get a pencil. Or imagine that you get a pencil and fill in the bubble sheet, but it can’t be graded.

We can’t end social distancing except as guided by widespread testing which is not yet available.

Below or attached, two graphs of the influenza pandemic of 1918-20, which we studied early in our course. The first shows overall mortality in various cities. Notice that the bumps in mortality came in three waves, the first being the smallest. The second shows the difference between the curves in Philadelphia, which had a parade of 200,000 people on Sept. 28, 1918, and waited two weeks after the first case to implement social distancing, and St. Louis, which instituted social distancing two days after the first case.

Please, be a part of the worldwide headless organization that will defeat this virus.

I know you are disappointed to be losing months of your youth, months of normal college, and for many of you the ceremonies of graduation. I am truly sorry. But I want you to have the rest of your youth and the rest of your life, and that of your parents and grandparents. We will figure out a way to make it up to you about commencement.

The “paranoia of stupidity” that Arthur Miller refers to is driving some people into the streets and into the arms of the virus. Yours is the intelligence that can subdue that paranoia.

You can’t always get what you want, but if you try some time, you just might find, you get what you need.

Stay safe, Dr. K

   

…and then there are experiments

“We will allow gyms, fitness centers, bowling alleys, body art studios, barbers, cosmetologists, hair designers, nail care artists, aestheticians, their respective schools, and massage therapists to reopen their doors this Friday, April the 24th.” Gov. Brian Kemp (GA), 4/20

“If there’s a way that people can social distance, and do those things, then they can do those things. I don’t know how, but people are very creative.” Dr. Deborah Birx, White House Briefing, 4/21

“My daughters who are, you know, 13 and 14 and 11, I mean, right away they’re asking me, ‘How does that work, Daddy?’” Dr. Sanjay Gupta, CNN, 4/21

Dear Students,

Y’all remember what an experiment is, right? Like, you’re in a lab with a lot of mice genetically engineered to mimic Alzheimer’s. They build up clumps of amyloid in their brains, and they get even dumber than other mice. You find a molecule that binds to amyloid and say, “What if I could get it to attack the amyloid clumps?” You randomly assign mice to get or not get your cute molecule, and presto, the ones who get it clear the amyloid clumps from their brains. “Whoopee,” you think. You and some brain docs recruit a few brave volunteers with early Alzheimer’s to take Cute Molecule. (Hopefully they didn’t volunteer because they were already demented.) Did their amyloid clear? Equivocal, but then again you didn’t kill anybody. You move on to a larger trial, with a matched control group. You don’t know who got Cute Molecule in different doses or who got a vitamin pill, and neither do they. Double-blind. Results: still equivocal. Back to the drawing board. But wait. You analyze the results again and find that the highest dose of Cute Molecule helped some patients. “Whoopee!” More studies.

Those are experiments.

And then there are experiments. Like the one Doctor—oh, I meant Mayor—Carolyn Goodman of Las Vegas proposed. She told Anderson Cooper on CNN, “We offered to be a control group…and I was told by our statistician you can’t do that…and I said, Oh, that’s too bad because I know when you have a disease, you have a placebo that gets the water and the sugar and then you get those that actually get the shot. We would love to be that placebo side so you have something to measure against.” Her fascinating hypothesis: the parts of Nevada that stay locked down won’t have less COVID-19 disease than Vegas, which she encourages to reopen its casinos, bars, and restaurants.

Students, this is your chance to be one of those brave volunteers pioneering in Doctor—I mean Mayor—Goodman’s big experiment! Fly to Vegas and elbow in among those crowds of gamblers from everywhere in the reopened casinos. If you are serious about gambling, this is the experiment for you!

Or, come back to Georgia and get a massage, a tattoo, a haircut, a perm, or a manicure. Those are some of the businesses that Doctor—I mean Governor—Brian Kemp reopened in our state! Maybe you’ll be the experimental group and North Carolina, the adjacent state that’s staying locked down, will be the controls. Really, what’s the worst case scenario? You help prove that our neighbors to the north are right—AND you are going to look sooo good in your coffin!

Then there’s the experiment proposed by the Doctor-in-Chief or DiC. You can really help out here. Swallow, or better still, inject Lysol or another disinfectant. I think he meant, like, in your veins? Also, get some really bright (but maybe not too thick) flashlights, turn them on, and stick them in all the places where the sun doesn’t shine.

But I digress.

[See disclaimer here]

Good News

  1. New York, by far the worst-hit state, is definitely healing. As the governor says, 400+ deaths a day is nothing to celebrate, but it’s far down from the peak, and the pressure is beginning to ease a bit in the hardest hit hospitals. Intubations have been lower than extubations for days, and New York (as promised) is sending ventilators to states that have not yet reached their peak. What goes around comes around.
  2. The Starfish model that I wrote about last time is working for America. Most governors, including many Republicans, are leading their respective points of the star and ignoring the decayed head. This is making our country resilient enough to defeat the virus with an adaptive, headless network. Large majorities of Americans are keeping up social distancing and are worried about opening too soon.
  3. A different point of the headless star, the U.S. Congress, passed another near-$500 billion relief bill, to save more of America’s small businesses from the virus (especially minority-owned businesses—the most vigorous part of the category). Also, the bill will strengthen production of personal protective equipment (PPE), swabs and reagents vital for testing, and actually deploy real testing programs.
  4. NY and LA have instituted something I’ve been waiting for: random sampling of their populations for antibody testing. This gets a snapshot of the impact of the virus: where it has been, how many people had it without symptoms, how it spreads, who is most vulnerable, and what the real numbers are—total cases, which leads to believable case fatality rates.
  5. A retired farmer in Kansas wrote Gov. Cuomo that he had saved five never-used N-95 masks from his farming days. His wife has one lung and is diabetic so he is saving four masks for his family. But he sent the fifth one to Cuomo, asking him to give it to a nurse or doctor in New York. The man said he didn’t expect an answer, but the Governor read it and reread it on national television. There wasn’t a dry eye in the house. That farming couple and others like them are another point of the resilient American star.

Bad News

  1. The fact that New York is sending ventilators to other states of course means that they have not passed their peaks of need but are still on the upswing (Utah, Mississippi) or in a plateau (Texas) of deaths. (Interactive graphs here.)
  2. Some states (Georgia, Florida, South Carolina, etc.), fortunately not many as yet, are as headless now as the nation is, and are pioneering ill-advised early opening. They can’t be effective points of the national starfish. But the mayors in most cities in those states—in Georgia, the mayors of Savannah, Augusta, Albany, Macon, Rome, and Atlanta—are the points of the now-headless state starfish. They will save the state, just as the wiser governors save the nation. The mayor of Savannah, for instance, has urged his citizens (in Georgia’s oldest city) to call their barbers and manicurists and pay for an appointment in the future, but not to go now.
  3. All the money from Congress so far does not begin to meet the need. It does not help the states to support first responders, provide adequate PPE, or deploy adequate testing and especially, contact tracing. Senate Majority Leader Mitch McConnell has advised states to declare bankruptcy, which is not legal, rather than use Federal funds to help hard-hit states. Much more is needed to rebuild crumbling infrastructure and finally build the health care delivery system we need. This would provide millions of needed jobs and leave our children with a more workable country.
  4. We are still woefully under-testing, and we need a ten-fold increase just to test for the virus itself. (The Rockefeller Foundation just issued a detailed plan for expanding testing and reopening the country). Crucial antibody (serological, you-had-the-disease) testing is far behind in numbers and most available tests are not accurate. A huge newly-trained force of people is needed to trace contacts.
  5. All experts agree that a second wave of the pandemic is highly likely in the fall and will intersect disastrously with the regular flu season, which it didn’t do this year. This includes the head of the CDC, the Surgeon General, Dr. Fauci, and Dr. Birx, who all risk being fired by openly contradicting their boss on this prediction. The best we can hope for is that we will have learned and that the next wave, even if it is worse, will not catch us flat-footed the way the first wave did. Watch the secondary waves already occurring in Asian countries.

Many experiments are under way and we will see how they turn out. That includes controlled experiments on treatments and vaccines, and uncontrolled experiments by politicians on volunteers who do not understand the risks they are taking by participating. The Mardi Gras experiment resulted in a large increase in Louisiana cases. The Wisconsin in-person primary election on April 7th is believed to have caused at least 19 cases, including at least one poll worker. Daily new cases in Wisconsin have seen an upturn (here, and graph below) in the two weeks since the primary. Live, in-person worship services, funerals, and other religious gatherings have resulted in many deaths, including an outbreak in Albany, Georgia after a funeral and the death of a pastor in Virginia who led live services. His wife also got the virus, and their daughter begs us to understand how serious the risks are. We will see what happens in Georgia barber shops and on Miami beaches.

Stay safe. Let me know if you’d like me to continue these updates beyond the end of the semester.

Dr. K

Important Disclaimer

Dear Students,

My eldest daughter, who has two sources of expertise on this—she was an Emory College student, Class of 2000, and is an attorney (JD, NYU Law, 2005)—has texted to caution me that not all of you may realize that I was being sarcastic in my last announcement:

“You have to tell people not to do this: ‘Then there’s the experiment proposed by the Doctor-in-Chief or DiC. You can really help out here. Swallow, or better still inject Lysol or another disinfectant. I think he meant, like, in your veins? Also, get some really bright (but maybe not too thick) flashlights and stick them in all the places where the sun doesn’t shine.’ You can blame it on your lawyer daughter. But you put it out there without making it expressly clear that nobody should do this and that they will die. You can’t (not you). Please. This is one of those situations where you should defer to my expertise. I love you.”

So, I am deferring to my daughter’s expertise. When I paraphrased President Trump’s advice about disinfectant, I was being satirical and sarcastic. I was mocking him. As she says, “NO ONE SHOULD DO THIS AND IF THEY DO THEY WILL DIE!”

President Trump also now claims HE was being sarcastic. You can judge for yourself here

Also, please read this warning from the manufacturer of Lysol disinfectant:

Regarding the use of thin flashlights in bodily orifices, you may use your own judgment. But please don’t lose your sense of humor.

Dr. K

Opening to What?

            “I think right now, because there’s been good news really, that the opening up is starting to happen faster than we expected, appears to be doing so safely, then there is a chance that we won’t really need a Phase Four [Congressional support package].” White House economist Kevin Hassett, Fox News, Saturday

            “Is this guy serious?” Mayor Bill DeBlasio, later that day

            “It’s devastatingly worrisome to me personally because if they go home and infect their grandmother or their grandfather who has a co-morbid condition and they have a serious or a very — or an unfortunate outcome, they will feel guilty for the rest of our lives,” Dr. Deborah Birx, Sunday.

            “This is definitely government overreach.” Lockdown protester on social distancing

Dear Students,

Given our studies of evolution in disease (Darwinian medicine), you won’t be surprised to learn that the pandemic coronavirus is mutating and adapting, although fortunately more slowly than seasonal flu. Nor will you be surprised to see natural selection operating at different levels. We are not sure that a bat was the origin, but if bats have it you know they’ll be evolving too. And so will we. Here is how the city planning commissioner of Antioch, California put it in a Facebook post:

The shelter in place needs to end, we as a species need to move forward with our place on Earth…This virus is like a human version of a forest fire, a forest fire will burn through and burn off all the dead trees, old trees…The strong trees survive and the forest replenishes itself and flourishes once again… If we look at our population as the forest you will see many similarities. We have our old, we have our weak and we have our drains on our resources. This virus is targeting those sectors of our population. If we were to live our lives, let nature run its course, yes we will all feel hardship, we will all feel loss. I am sure everyone of us would lose a person who we hold dear. But as species, for our Nation and as a Planet we would we would strengthen when this is all settled. We would have significant loss of life, we would lose many elderly, that would reduce burdens in our defunct Social Security System, health care cost…make jobs available for others and it would also free up housing… We would lose a large portion of the people with immune and other health complications… But that would once again reduce our impact on medical, jobs and housing. Then we have our other sectors such as our homeless and other people who just defile themselves by either choice or mental issues. This would run rampant through them and yes I am sorry but this would fix what is a significant burden on our Society… Of course we would lose many of the “Healthy” maybe even myself but that is the way of the World!

I am sure you see the logic in this as clearly as you see its inhumanity. This is so-called Social Darwinism at its worst, and the end result is a Nazi-like culling of the “unfit” from our populations. Nazis carried out mass murders as “euthanasia,” and one of the ways they did it was to crowd Jews into ghettos where typhus and other deadly microbes were brewing and then (see above) “let Nature take its course.” A friend of mine, Tosia Szechter Schneider (now 92) lost her mother and other family members to typhus in one of those Nazi-encouraged experiments in letting Nature take its course. You may remember what Darwin said about this in The Descent of Man:

The aid which we feel impelled to give to the helpless is mainly an incidental result of the instinct of sympathy, which was originally acquired as part of the social instincts, but subsequently rendered…more tender and more widely diffused. Nor could we check our sympathy, if so urged by hard reason, without deterioration in the noblest part of our nature… If we were intentionally to neglect the weak and helpless, it could only be for a contingent benefit, with a certain and great present evil.

In other words, Darwin rejected the moral lapses that some people argued should derive from his own theory. He understood that being human gives us choices that other animals don’t have, and he wanted us to use those choices to protect the weak, not “let Nature take its course.”

            But you might decide Darwin is wrong and the Antioch commissioner is right. I hear some young people have suggested COVID-19 parties where you can infect each other, get a (probably) mild illness, and get it over with! I suggest the following song after you’ve had a few beers. (It’s sung to the tune of the title song in the ‘60s musical Bye Bye Birdie.):

Bye bye Grannie,

We’re gonna miss you so!

Sorry, Grannie,

But ya gotta go!

If you’re curious about this tune click the link now, because after Nature takes its course, no one left alive will remember it, and you’ll never hear of it again.

[Important disclaimer! I don’t really advise you to have a COVID-19 party!]

Good News

  1. “Good to be with you,” said Gov. Cuomo Sunday to one of the four governors joining him virtually and pragmatically in a new consortium. New York, the tip of a severed starfish point, has regenerated much more of the point by bonding with Connecticut, New Jersey, Pennsylvania, and Delaware to coordinate rules and to bulk-buy protective and testing equipment at better prices.
  2. Remdesivir, an antiviral that was developed for Ebola, has reportedly shown its ability to reduce ICU stays from 15 to 11 days in very sick patients. This, if it holds up, is great news. The drug will not be withheld in new trials (now unethical), but will be added to other study drugs in continued research. Bill Gates’s foundation and others are working aggressively (“The Therapeutics Accelerator”) on a treatment that would use monoclonal antibody technology to derive drugs from convalescent plasma, among other treatments.
  3. Testing of two main types (for current virus and for antibodies raised by past virus) is ramping up, although not nearly fast enough. Home self-tests (like the ones we have for pregnancy) should soon be more widely available. Contact tracing, far behind testing, is slowly improving. Random-sample testing in a few places is beginning to clarify how the virus has spread and who (by age, location, ethnicity, and gender) is affected most.
  4. New cases in South Korea that appeared to be reinfections of people who already had it (i.e. they lost their protection in weeks to months) now appear to have been head fakes (false positives), caused by what one expert calls “viral litter”—non-dangerous fragments of viral RNA lingering from the infection.
  5. As many as a hundred labs worldwide are working as hard and fast as they can on vaccine candidates. 95 percent of these could fail in clinical trials (the hard part) and we would still have a few to use. Factories are being built and adapted long in advance of this to produce up to billions of doses that will eventually be needed. Up to 14 vaccines have already entered Phase 1 clinical trials, much sooner than most experts expected.
  6. The modelers at the University of Washington (IHME, led by Chris Murray) have detected a heat effect that is much less than it is with some other viruses but greater than previously thought for this one. Therefore a hot summer will work to a modest extent against the social factors making things worse.

Bad news

  1. Rules are being relaxed by states in an uncoordinated way, without a flicker of national leadership, except in the direction of greater risk. Few if any of the states reopening have met the national standard, put forth recently, of having declining cases for two weeks; most still have rising cases. The Federal government has ordered meatpacking plants, essentially petri dishes for the virus (like cruise ships and prisons), to reopen and stay open, and these are and will be places from which many American communities will become disaster areas.
  2. As Bill Gates remarked on CNN Friday, the so-far modest impact of remdesivir is not going to make us say, “Let’s go to the movies.” Experts note that a smaller study (but a good one, and large enough to show a substantial effect if there were any) in The Lancet found no effect of the same drug. The larger study praised by Dr. Fauci has not been published or peer-reviewed, and all we have so far is a press release and his word.
  3. Testing and contract tracing, the life blood of safe reopening (and therefore of economic recovery) is primitive in our country. We have around 200,000 tests a day nationally, done for the sick and a few others (like health care workers) in most places, but otherwise haphazardly. Expert opinion on how many tests we need range from 5 million a week to 20 million a day. Given that we are most infectious in the first few days of symptoms, or even before, tests that take days to get results are of limited value in controlling the pandemic. “What’s the point?” Bill Gates asked the other evening. “Do you just send apology notes to the people you infected in those 3 or 4 days?” The Gates foundation is supporting the scale-up of rapid testing.
  4. Perhaps the biggest unanswered question is what is the extent of our immunity after having had the virus and how long it will last. Could it be like chickenpox, one and done for life? Or more like flu, protection for a season? The same questions apply to vaccines; this year’s flu vaccine was 50 percent effective.
  5. Speaking of vaccines, the 12-18 month time-frame often mentioned for getting to distribution of a safe and effective vaccine would be by far the shortest in history. Animal models have limits; Dr. Sanjay Gupta reminded us the other day of an old doctors’ saying: Rats lie, monkeys exaggerate. Perhaps the brute force of a hundred labs parallel-processing various methods will accelerate the time to large human trials, but those trials take time. Many will fail and some may fail dangerously.
  6. Internal Trump administration memos revealed today project 3,000 cases per day in June, about double what we have today and higher than the highest peak so far (~2500 in mid-April). These new projections may to be what led President Trump to say yesterday that total deaths could go to 100,000. Given how optimistic he has been in the past, this could be interpreted as meaning that he is deliberately choosing economic activity over preventing mortality, and we should be prepared for more.

Almost half the country is officially open to some extent as of today. “Government overreach”—for your protection—is (temporarily) ending in many states. Watch the states, as well as other nations (with much better testing) that are opening and see what happens. It’s interesting that Dr. Birx (quote up top) misspoke slightly in expressing her worries about the people who don’t do social distancing in protests: “they will feel guilty for the rest of our lives”—the line between “their” and “our” indeed blurs.

Nationally, we’ve been stuck on a fairly stubborn plateau of cases and deaths as states with increases replace those with declines. Projected cases, hospitalizations, and deaths that two weeks ago gave me hope of a more normal summer before a possible fall wave were based on the assumption of serious social distancing through May. That hasn’t held, and all models are projecting more deaths. The latest today (May 4) from IHME projects 134,000 deaths by August, almost double the number projected 6 days ago. I wish I could tell you that college will be live in the fall. As Gov. Cuomo said today, “Know what you don’t know.”

I don’t know for sure, and I’m sorry to have to say it, but it seems to me we have chosen mobility over sheltering and death over life.

The weather’s great, go out (seriously), enjoy a walk or a run alone or with someone you trust. Wear a mask (as Cuomo says, it’s a sign of love and respect for others, because it protects them from you), stay at least six feet (two meters) away from anyone not part of your household, go home as soon as you can, and wash your hands obsessively. While you’re out, observe the crowds who aren’t doing the above, and if you’re religious say a prayer for them, because in a couple of weeks they are going to need it.

As for you, please to take to heart what Tim Cook, head of Apple, said to the new Ohio State grads in his online commencement address: “I hope you wear these uncommon circumstances as a badge of honor.” This is my hope for you in your own futures. Do the right thing now, and live to brag for the rest of your lives about how you made it through COVID-19. As you have heard me say many times, you are lucky to have great gifts, and the world has a right to expect leadership from you.

Dr. K

Note: Please don’t just rely on me. I recommend the following good sources: The Bill & Melinda Gates Foundation COVID-19 Update, aka The Optimist; This Week in Virology (TwiV) podcast; IHME (U. of Washington) model website; COVID-19 UpToDate for medical professionals; and for all readers: Why the Coronavirus is So Confusing. Dr. Ashish Jha of the Harvard School of Public Health said on Thursday, “I grew up as a public health person loving and admiring the CDC, arguing and believing that it is the best public health agency in the world… But in this entire pandemic, it’s been one fiasco after another. And it’s either possible that all of the scientists all of a sudden forgot their science, or there’s something at the leadership level that’s really hindering them.” 

 

 

 

 

 

 

 

 

 

 

 

 Filter replies by unread Show deleted replies      

 Reply to Opening to What?

Les Jeux Son Faits: COVID-19 Update to Students

“If some areas, cities, states, or what have you…prematurely open up…my concern is that we will start to see little spikes that might turn into outbreaks.” Dr. Anthony Fauci, answering Sen. Patty Murray, May 12, 2020

“When the outbreak started, sir, we had an aggressive contact tracing program, but unfortunately as the cases rose, it went beyond the capacity…so we lost the containment edge.” CDC Director Dr. Robert Redfield, answering Sen. Tim Kaine, May 12, 2020

“The purpose of science is not to open the door to infinite wisdom but to set some limit on infinite error.” Bertold Brecht, Life of Galileo

Dear Students,

Les jeux son faits. Or in English, the die is cast. Or in plain American, the dice have been rolled. Think of a slow motion video with a close-up of a hand releasing the small dotted cubes. We watch them seem to float through the air, then one, then the other touch the table surface ever so gently, then they bounce and float again, and then…

Never have I hoped so much that I would lose a roll of the dice, because I (among others) have hypothesized disaster. I want to come up “snake eyes” and slink away from the game. I want the majority of states opening up to come up with sevens and elevens. I want the American people to win this great gamble. We know so little about this virus that there’s a chance for an unlikely outcome, on either side.

No matter now though. Les jeux son faits. The video is so slow that it may take two weeks for the rolling dice to come to rest.

I am not going to repeat what I said in my previous updates about patience and precautions. My news this week is about what in our course we always called “Nuts & Bolts.” The slogging may be a little heavy in places. After all, I’m the professor. Knowledge is news. Knowing what you know is good news.

Good (Science) News

  1. We have known the sequence of this virus, SARS-CoV-2—causing the illness COVID-19—since early January. It is a single strand of RNA of a strain new to humans, with a wide adaptability, causing disease in many mammals. There is a bat coronavirus that is 93% identical to it, but other human SARS-CoVs are only 80% identical. It has a large genome for an RNA virus, with multiple “hot spots” for mutations, although it mutates slowly compared to flu.
  2. Corona, meaning crown, refers to the club-shaped surface proteins (aka “spikes”) that cover the surface created by the RNA with the help of human cells’ machinery. It has to get into our cells, and we have known since March that it does that because the spikes recognize an enzyme on cell surfaces called ACE2, normally part of a complex sequence controlling blood flow and blood pressure. Spike proteins use ACE2 to (sort of) pry open the cell. Once in, the RNA replicates itself and makes spike and other proteins protecting it and countering our immune system. It can do this (I’m estimating) a gazillion times.
  3. The first and still most accurate test for active cases of the virus uses a version of PCR (the polymerase chain reaction) to amplify the virus’s RNA enough to measure it accurately. Last month a device from Abbott called ID Now that amplifies viral RNA much more rapidly was approved for emergency use. Last Friday (5/8) the FDA approved for emergency use a first-in-class test for viral antigens, meaning fragments of viral proteins. It is also possible to infer the presence of the virus indirectly from very high levels of IgG antibodies (Abs, pronounced “ay-bees”). At-home testing is partly approved; DIY sample collection, send in the sample.
  4. With regard to establishing who has had the virus and recovered (or never showed symptoms), there are up to 12 approved antibody tests and 200 more in development. Most of these are qualitative, especially the rapid-diagnostic ones (RDT; 10-30 min) using finger pricks, saliva, or nasal swabs. They tell you you either do or don’t have IgG or IgM antibodies to the virus. ELISA assays (2-5 hr), showing how your antibodies combine with viral proteins in a dish, can be quantitative. Neutralization assays (3-5 days) put your cells and Abs in a dish with the virus and quantify the amount of Abs needed to block the virus from entering the cell.
  5. Treatments under study include antivirals (Remdesivir and others developed for older viruses), immunotherapies (which, like interferon beta, strengthen the immune system), convalescent plasma (from recovered patients), immune globulins (Abs purified from same), monoclonal antibodies (Abs specific to viral proteins, mass-produced from cloned cells), and others. Remdesivir shortens hospital stays in very sick COVID-19 patients from 15 to 11 days. (For true nerds, Remdesivir mimics the RNA base adenine; it slips into adenine’s place in viral RNA replication, dashing the virus’s reproductive dreams, partly.)
  6. Roughly 100 labs around the world are developing COVID-19 vaccines by varying methods to increase the chances of success. This includes DNA and RNA vaccines matching part of the viral genome, proteins mimicking part of the spike, and other strategies. The first clinical trials were begun 62 days after the virus sequence was published, by far the fastest time ever, around 10 more were added by late April, and more will begin soon. Dr. Fauci said today that, “this is a virus that induces an immune response, that people recover, the overwhelming majority of people recover from this virus… The very fact that the body is capable of spontaneously clearing the virus tells me that, at least from a conceptual standpoint, we can stimulate the body with a vaccine that would induce a similar response.” So he considers it “much more likely than not that somewhere within that time frame [12-18 months] we will get a vaccine.”

Bad News

  1. The supply chain is not robust for any of the above, and will not be for many months. Remdesivir, the only proven (in an unpublished study), partially effective treatment is being rationed to states and hospitals, forcing doctors to play God. There is not yet a serious plan to ramp up new pharma factory building to meet the coming demand for treatments or vaccines, if and when they are proven.
  2. We continue to have a poor grasp of the nature of this virus. It behaves differently in different countries, perhaps more so than be explained by the varying quality of social hygiene. No one knows how many asymptomatic cases there have been, why there is so much variation in the length of presymptomatic infectiousness (~2-14 days, average around 5), why young adults have mild or no illness, why children are usually asymptomatic carriers but (rarely) develop a just-discovered life-threatening illness (viral? post-viral?), why it attacks the lungs in most patients but in some attacks the heart or other organs while sparing the lungs. One thing we do know: it is very contagious. In evolutionary terms, it’s very clever: “I’ll infect the active young without (usually) killing them, because they’ll carry me around the globe.”
  3. Testing for active infection is currently around 250,000 a day nationally. Even the Federal government says we will probably need to get to 1.5 million a day, and other public health authorities and economists say will need 20 million a day or more to safely get the economy, including education, back up to speed. Our government brags that we have more testing per capita than South Korea. Yes. Now. After that country has beaten down the first wave of the pandemic because it had scores or hundreds of times more testing than we did in February and March. Contact tracing is practically non-existent so far, and hundreds of thousands of tracers may ultimately be needed. See what other countries have done here.
  4. Testing is less sensitive (does it pick up everyone who has the virus?) and specific (does it identify accurately those who don’t) as it becomes more rapid. Antibody testing is far behind active virus testing, which is far behind that in other countries. Ab testing is also less accurate. Regulation of antibody (serological, post-illness) testing is chaotic; companies governed by profit motive abound.
  5. Only one treatment (Remdesivir) is proven effective in COVID-19 illness, and Dr. Fauci (who almost leapt out of his seat with excitement when he first announced it) today called the effect “modest.” There are no meaningful treatments yet. Remdesivir helps (we think) but as mentioned is being rationed to a fraction of the patients who need it. This rationing will be repeated with any future proven treatments. The treatment ultimately will likely be a cocktail of different drugs, as with HIV, but that took years to develop. A smart friend of mine, Cynthia Fox (author of Cell of Cells) says her motto is CCC—Cocktails, Cocktails, Cocktails!
  6. The bottleneck for vaccine deployment has nothing to do with lab science, it has to do with three phases of clinical trials. That’s what will take 10 to 16 of the 12 to 18 months (minimum) needed. Why? because some vaccines have triggered devastating immune responses, sometimes deadly. I remember 1977, when the swine flu vaccine caused hundreds of cases of a nervous system disease, and the 1990s, when early rotavirus vaccines caused very serious intestinal complications requiring surgery. I want you to trust vaccines, but only vaccines that have been properly studied for safety and efficacy. Unlike the lab development phase, that can’t be rushed.

Also in today’s Senate hearing, Dr. Fauci said, “The idea of having treatments available, or a vaccine, to facilitate the reentry of students into the fall term, would be something that would be a bit of a bridge too far.” I hope he is being too pessimistic, but hope doesn’t make things happen. Sometimes, if we’re lucky, science does. And science needs patience.

Stay safe, Dr. K

Opening Gambits: Freedom Goes Viral

            “With your talents and industry, with science, and that stedfast honesty which eternally pursues right, regardless of consequences, you may promise yourself every thing—but health, without which there is no happiness. An attention to health then should take place of every other object.” 

                        Letter from Thomas Jefferson to Thomas Mann Randolph, Jr., July 6, 1787

Dear Students,

The letter that includes the above passage was written as part of a series to a young man of great promise. Randolph was 18 on the date above, which happened to be two days after the 11th anniversary of the Declaration of Independence. The Constitutional Convention was under way in Philadelphia, but Jefferson was still posted to Paris. (The federal government, still based in Philadelphia, was suspended several times during the 1790s yellow fever pandemic.) He began the letter by apologizing for his delay; he’d been traveling in southern France and northern Italy.

There is plenty of other advice in the letters, but young Thomas had been seriously ill a couple of years earlier, and the elder Thomas was concerned. The young man did take care of himself, and when the Jeffersons returned in 1789, he courted and married Jefferson’s eldest daughter Martha. They had 13 children together; 11 survived to adulthood. They eventually became estranged because his drinking interfered with his health and their life, although she was at his bedside when he died at age 59. But first he was a colonel in the War of 1812, served two terms in Congress, and became Governor of Virginia.

His future father-in-law’s advice kept him healthy for decades, and when he stopped following it he paid the price. I wonder what Thomas Jefferson, perhaps the greatest founder of early American freedoms, would have thought of the people risking their health and that of others to protest social distancing—while crowding together and refusing to wear masks—in the name of freedom.

All 50 states and many countries are easing or marching boldly out of their lockdown phases. It’s too soon to know the results; I predict they will be fine in some places and terrible in others. However, even “terrible” is in the eye of the beholder. Sweden has twice the population of Norway but around 16 times the number of COVID-19 deaths. Swedes regret that so many elderly and vulnerable people have died, but they defend their strategy of valuing individual autonomy and freedom; they think that other countries will have to follow their lead to the elusive goal of herd immunity.

Clearly a large minority of Americans agree. New York is opening slowly and carefully, but only after rigorous measures put its severe epidemic almost completely behind it. Texas and North Carolina are opening  boldly while cases continue to rise. The US as a whole gives a false impression of decreasing cases, but that is due to the huge decline in the worst-hit state, New York; most of the country is flat or rising.

The First Amendment to the Constitution, insisted on by Jefferson and drafted by James Madison, is now being used by leading legal authorities to justify anti-lockdown protests; they don’t mention the limits on my freedom to falsely yell “Fire!” in a crowded theater, or on my freedom to drive myself home from a party where I’ve been drinking. Protests are different as long as they’re non-violent. Apparently, wilfully spreading viruses more dangerous than bullets (bullets don’t keep jumping from person to person) is non-violent.

Good News

  1. The pharmaceutical company Moderna reports that of 45 patients who received their experimental vaccine, the 8 who got two specific doses (25 and 100mg), mustered antibodies to the virus more strongly than those found in people who have recovered from the disease. This vaccine uses messenger RNA (mRNA), which the viruses uses to make its proteins; this is a new approach that could be a game-changer for other viruses.
  2. Some states are opening slowly, carefully, and systematically. California is expanding its corps of contact-tracers from 1000 to 13,000. New York is deploying both viral and antibody testing, as well as contact tracing, and is poised to reimpose any restrictions it lifts if conditions warrant that. In Germany, this sequence from lockdown to partial opening, to small outbreaks, to selectively reimposed lockdown has already cycled through. When we have broadly available testing and contact tracing, as only a few places are approaching now, we can reopen more safely.
  3. Hospital systems are no longer overwhelmed in most of the U.S., and increasing numbers of elective procedures unrelated to COVID-19 are being done. Important exceptions are small community hospitals in areas surrounding meatpacking plants, prisons, and other hot spots, which may still be headed for disaster.
  4. Stay-at-home orders have worked. A multicity ongoing study conducted by the School of Public Health at Drexel University, estimates that the successful stay-at-home patterns prevented more than 2 million hospitalizations and 230,000 deaths. There is no vaccine and no treatment that has any prospect of making this much difference in the near future.
  5. We are understanding more and more about the course of illness (look at the excellent Medscape graph below; no, really look at it), modes of transmission (very numerous), and symptoms, especially those outside the lungs, also numerous.

Bad News

  1. Just as one swallow doesn’t make a summer, 8 people responding doesn’t make a vaccine. The Moderna study is a very early Phase 1 trial. Phase 2 will involve hundreds of people, Phase 3 thousands. About a hundred other vaccine candidates are under study. I wouldn’t want to be a premature adopter of any of them. Remember that uselessness in preventing the disease is certainly not the worst possible vaccine outcome.
  2. I believe that bad blunders are being made in some reopenings. Time will tell, and it will take time because some states and localities are doing it right, some are not, and people in many places are taking more or fewer risks than their governments advise. I get that everyone is tired of being locked down. Imagine how tired we will be of death if the second wave (almost certain to come in the fall, complicated by flu season) has, like the second wave of the 1918-19 flu, far more cases and deaths than the first wave. All the carpenters in America working full tilt could not make enough coffins.
  3. The small rural hospitals that may soon be overwhelmed are far less resilient, flexible, and resourceful than the big urban hospitals that expanded their ICU, ventilator, and to a lesser extent PPE capacity, in a matter of days to weeks in April. Community hospitals, even if they could somehow get the beds, ventilators, and other equipment, do not have the expertise to use them. Perhaps an army of doctors, nurses, respiratory therapists, and others from major medical centers will fan out to the rural hotspots overnight, but those people are literally sick and tired. How much damn heroism can we expect?
  4. Lockdowns have worked, but they are ending in haphazard ways, with hopelessly inadequate testing and tracing. We just have to see what happens, and continue building up (high-quality) viral testing, antibody testing, and contact tracing. Experts keep hammering away at this advice for a very simple reason: We are not there yet. Here’s your mnemonic: TETRIS: TEsting, TRacing, and ISolation.
  5. There is so much more about COVID-19 and SARS-CoV-2 that we don’t know. First, it was “Children don’t get it,” then, “They might be carriers,” then, “They’re definitely carriers but they don’t get sick,” to “Hundreds of children are showing up with a devastating post-viral hyperinflammatory syndrome and some of them have died horrible deaths.” The number with this, Multisystem Inflammatory Syndrome in Children may or may not remain small. Also, loss of smell and taste went from “Maybe in some cases” to “Maybe in a lot of cases” to “Often the only symptom.”

Your fellow student Caroline Yoon sent me a marvelous question the other day in a message called “Your take on positive retests?” She was concerned about the apparent reinfections in South Korea and on the aircraft carrier U.S.S. Theodore Roosevelt, and asked whether there might be reactivation of a long hidden infection as with HIV. It could be reinfection or reactivation or lousy tests, no one knows. But here’s my answer:

“The evidence of possible reinfection is very concerning in the two places you mention. The South Korea cases may be attributable to testing difficulties; the negative tests they had may have missed continuing infection (false negatives; there is a lot of evidence that this can linger for weeks to months). Or, the positive retests may be due to what some call “virus litter”—fragments hanging around after the infection is over (a type of false positive). The interpretation is complicated by post-infection symptoms due to viral damage during infection that takes a long time to heal, or to overactive and prolonged immune responses. The dreadful syndrome that has been hospitalizing and in some cases killing children (fortunately still a small number) is thought to be a post-viral hyper-inflammatory syndrome, perhaps a kind of autoimmune overreaction.

“The possible reinfection cases on the Roosevelt are more concerning to me than the South Korean ones, because conditions have been so controlled. The now 13 sailors who have retested positive did so after 14 days of quarantine and two consecutive negative tests. We haven’t been told whether any of the 13 have shown symptoms. Today it was announced that the Roosevelt will leave Guam and go back to sea—presumably, one hopes, without those 13. This will be an informative, I hope not dangerous, experiment, as the ship had over 1000 cases at one time not too long ago.

“I wish I had more definitive answers. Sometimes the best we can do is admit our ignorance, while pushing science forward to alleviate it.

“Stay safe, best wishes, and thanks again for your questions, Caroline.”

“Dr. K”

Eric A. Meyerowitz, MD; Aaron G. Richterman, MD, MPH,

A Quick Summary of the COVID-19 Literature So Far – Medscape – May 18, 2020.

100,000

Dear students,

Before I share a few post-Memorial Day thoughts about the virus and this tragic and needless milestone, I would like to mention two people who have died recently but not from the corona or any virus: George Floyd, a black man who was killed by police in Minneapolis, Minnesota, by strangulation, while handcuffed on the ground begging for his life, and Ahmaud Arbery, a black man shot and killed by vigilantes while jogging, in a modern-day lynching in Brunswick, Georgia. These tragic and needless deaths were part of the same long-standing pattern of structural racism which, as you know, accounts for the huge over-representation of African-Americans in the deaths from COVID-19.

I am frankly confused about where we are in the pandemic right now, both in our country and the world. More Americans have died of COVID-19 than in all the wars since the Korean War, and it is quite possible that before this is over we may be able to include the Korean War in that count. I see what appears to be a wholesale abandonment of the science of public health and medicine by many Americans. I can’t tell you how many, but I am pretty sure it’s enough to keep the U.S. epidemic boiling (not simmering) for months. Maybe we get a rest in September before the second wave. Or will it be the third wave?

I’ve always told you the most important thing you have to know is the limits of what you know. So I’m telling you now. I don’t know. I don’t know. I don’t know.

I don’t know about future cases, hospitalizations, or deaths because the models are shot to hell by the unpredicted and unpredictable behavior of a substantial minority of Americans. I don’t know about progress in vaccines or treatment because every announcement is not a scientific publication but a press release that hugely moves stock prices, especially of the companies involved. Remdesevir and convalescent plasma are in wide use and seem to have some effectiveness, but convincing studies have not been published. I do know something about the anti-malarial drug Whaddayagottalose-oquine. Worldwide randomized controlled trials have been stopped because more people die with it than without it. I took it for years, first to prevent malaria in Africa, then for a minor autoimmune condition. On March 25th in a private email I said that more research was needed but that I would take it if I got COVID-19. Now I wouldn’t. Lesson? Anecdotes, even from smart people, are no substitute for real studies.

This past weekend we commemorated those who gave their lives for our freedom; they died hoping we would use freedom wisely. Yesterday we flew our flags at half-mast to mourn 100,000 dead Americans. Today I want to celebrate the new warriors at the front of the coronavirus wars.

Good News

  1. Dr. Richard Levitan, 59, a leading expert on teaching intubation, left safe Northern New Hampshire to volunteer for ten days at New York’s dangerous Bellevue hospital. After his first exhausting shift he went to his brother’s apartment, where he was staying, and was kicked out by the building’s other residents. He found some kind of lodging, completed his ten days, and wrote an article teaching others throughout the world how to deal with COVID-19 pneumonia.
  2. If you click on one link in this message, make it Dr. Sharon Duclos, a Family Medicine specialist in Cedar Valley, Iowa, and watch the video, recorded on May 6th, the day before the local Tyson meatpacking plant, the source of the cases that overwhelmed Dr. Duclos and her colleagues, reopened under government orders. She appeared calm today (May 28) at a press conference with other local medical leaders; she is at around minute 14:30 in this new video. She implored people to keep taking precautions, “as we go through the little lulls and valleys, and the peaks that will occur with this, for months to come.” More on this below.
  3. Sylvia Leroy, 35, was a labor and delivery nurse at Brookdale Hospital in Brooklyn, where patients she cared for were positive for the virus. She got it. She was 28 weeks pregnant with her second child. Her own hospital did not take proper care of her. She was transferred to Mount Sinai where she got better care but went into cardiac arrest for some four to eight minutes; the doctor who called Sylvia’s sister was crying herself. They delivered her baby, Esther, by C-section. The baby needed oxygen but was “pink and healthy.” As of May 20, Sylvia was very slowly recovering from brain damage; Baby Esther was doing well. See their GoFundMe page here. Her sister once asked her why she didn’t go into private practice. “And she said to me, ‘This is an underserved community. Who is going to help them if I don’t help them?’”
  4. Dr. Ryan Padgett, 45, who played football for Northwestern in the Rose Bowl, was one of the first U.S. doctors to get the virus. It was still February, and nobody knew anything, but he was taking care of a string of patients from one nursing home in Kirkland, Washington. He was in great shape, hardly ever missed a day of work, but in March he was near death. He recovered, but still had more recovery ahead of him, when he said, “As an emergency physician, you walk into every single room and take care of whatever is there. Going back, I don’t think that will change. I hope not.”
  5. Dr. Theresa Greene, an emergency physician in Miami, temporarily lost custody of her 4-year-old daughter because she takes care of COVID-19 patients. She said, “I think it’s not fair. It’s cruel to ask me to choose between my child and the oath I took as a physician. I won’t abandon my team at work or the patients who will increasingly look to me to save their lives in the coming weeks, but it’s torture.” She and her husband have amicably shared custody since their divorce two years ago. Why is this under “Good News”? Nobody’s sick. Nobody died. However unfair it may be, mother and daughter will live to put this separation behind them.

Bad News

  1. Madhvi Aya, 61, was a doctor in India but a senior physician assistant in the U.S. She worked at a hospital in one of the poorest sections of Brooklyn; it was overflowing with coronavirus patients, and she was there until she got sick herself. At the end, in a different hospital, she was alone after texting with her husband, mother, and daughter, whom she had been very afraid of infecting. She often said, “We have to take care of our patients first.”
  2. A nurse who must keep her identity secret for her own protection was on a bus in Chicago, coming home in her scrubs from a difficult shift, coughed into the crook of her elbow, with a mask, and was punched in the face by a man who accused her of trying to give him the virus. He gave her a black eye. Attacks on coronavirus heroes in all frontline professions have been happening all over the world. “It’s not going to stop me from coming to work every single day and taking care of the people I take care of,” she said.
  3. Immigrant Celia Marcos, 61, worked as a nurse at Hollywood Presbyterian Medical Center for 16 years until her death in April from COVID-19, which she almost certainly contracted from a patient. Her family and colleagues state that she was not provided with proper PPE, which the hospital denied. Her son Donald said, “when the call of duty came, she will do the best that she could.” He also said she “coded seven times” before she died. In their last conversation he said, “when you get out of that hospital, you will retire immediately.” She barely was able to say yes. Both were crying.
  4. Jason Hargrove, 50, a bus driver in Detroit, loved his job and did it faithfully, carrying essential workers and others to their own jobs. A passenger openly coughed near him without covering her mouth, and he recorded a Facebook video about the incident. He was worried about the other passengers and himself. He said, “I feel violated.” He died of the virus 11 days later. He left home by 5am and disinfected his bus every day. He would tell his wife, “Baby, when you get off work, make sure you grab me some more Lysol… I gotta make sure that my people are protected.”
  5. Dr. Lorna Breen, 49, head of the emergency medicine department at NY Columbia-Presbyterian Hospital, contracted the virus while heroically trying to save others. She recovered, but the hospital told her to stay home. She moved from NY to her parents home in Charlottesville. There, with no history of mental illness, she took her own life. Her father said, “Make sure she’s praised as a hero.”

Under the Russian Tsars, young men were drafted into the army for 25 years. As a child I knew an old man who had chopped off the first joint of his own trigger finger to avoid that fate. And why do I mention this? Because many, maybe even most of you, have told me you want to become nurses, physician assistants, or physicians. You are signing up for roughly twice the length of service that the Tsars demanded of young people. There will be another pandemic like this in your career. You will be called on. Even medical students have been called on in this crisis. You will not say no when you are asked to put your own life, and that of your loved ones, in danger, because that is your oath. Even when you think or know that you are risking your life for stupid people who put their own lives in danger, you will serve. Know what you are signing up for.

It was very interesting for me to watch today’s press conference on local television in Black Hawk County, Iowa. This is the cutting edge of the U.S. pandemic going forward. The local Tyson meatpacking plant reopened because the governor and the president said so, and because it was in their financial interest. Three leading local physicians and county health officials spoke. They stated that they did not know what was going on at the Tyson plant and would not be getting that information. They said they could not do contact tracing of confirmed cases. A county health official laughed at the idea of testing health care workers in nursing homes, because they don’t have the resources to do it.

Don’t think about New York any more. Think about Black Hawk County. Times ten. Or maybe times 100.

Stay safe,

Dr. K

“I, Corona”: My Exclusive Interview with the Little Guy Who’s Changing the World

Dear Students,

I have a special treat for you today, an exclusive interview with SARS-CoV-2, his first ever, on his life and times so far. I was able to arrange this through my special friend Charles Darwin, whom Sarsie—his preferred nickname—likes to call Uncle Charlie. Sarsie doesn’t think he’ll be confused with his older brother, SARS-CoV-1, whom he calls “pathetic,” nor does he think highly of his cousin MERS. “I mean, really, a few months in one or a few places, and then, poof! they’re pretty much gone.” He has a certain grudging admiration for cold viruses.

            But I’ll let him tell you in his own words. By the way, he insists on he/him/his, because as he puts it, “I don’t have the equipment to reproduce, so I gotta beg, borrow, or steal it from someone who does. I just put in my genes, and they do the rest. Also, let’s face it, a guy like me, who puts ambition above everything…I mean, I’m most likely gonna be male, right? Yep. My whole species, and my brothers and cousins too.”

            He asked me to call this column “I, Corona,” as an hommage to Isaac Asimov’s science fiction classic, I, Robot. “I didn’t like his three ethical laws, of course, but when he got to the part about robots that secretly run the world, I could definitely wrap my envelope around that. But why keep it a secret? Just take the world over and run it, I say.”

            What follows is a lightly edited version of our interview, with my questions removed. Not that there were many. He doesn’t let a human get a word in edgewise. So I listened and learned.

            “Yep. I’m on the move for sure. My bros and cousins were well meaning, all princes in their way—and we’ve got more princes than the Saudi Royal family—but I’m the Crown Prince (get it? Corona? Crown?) and I will be King.

            “By the way, this whole debate about am I alive? Am I alive? Are you kidding me? I’m alive and I’m eating you alive.

            “But back to the family. We’ve only been around a hundred thousand years, less than you even, but then again, we reproduce in 48 hours, you take 20 years. Do the math. Ex. Po. Nen. Shl. As Uncle Charlie would say, we can sure do some evolving.

            “The family divides up the spoils, but we’re not all equally successful. Some of the corona cousins specialized in farm critters. It’s a dirty job but somebody’s gotta do it. Let’s be honest, though, you’re not goin’ down in history for makin’ a chicken cough or givin’ a pig a belly ache. Then there’s the bunch I call the Corona Sniffles, they’ve done alright for themselves actually, they got around, they hang around, they evolve, they come back. No drama, mama, but Uncle Charlie would be proud.

            “SARS-1 did alright for himself but he just couldn’t get transmissable enough, and on top of that he only jumped from Jim to Jane, or from Zhang Wei to Mei Ling, after he gave Jim or Zhang symptoms. Jane and Mei knew to keep their distance. So my Sarsie-1 bro hit Guandong Province in China, got to Toronto somehow, and got locked in with quarantine. 8,000 cases, 800 deaths, a little economic slump, that was about it. One wave in 2003, so far done and done.

            “Cousin MERS was a killer though, too much for his own good. You kill a guy, he ain’t passin’ you on. Also Cousin MERS was never good at jumping from one of you sorry humans to the next. Probably more of you have gotten him from camels than each other. He broke out in Saudi in ’12, trickled around to 27 countries since, 2,500 cases, 800-some-odd deaths, well controlled by even your bumbling species, nothing to write home about.

            “You can see where I’m goin’ with this. I’ve done more in eight months than the rest of them put together. I’m the Crown Corona Prince by acclamation. I mean, let’s look at the facts. Okay, I was trapped in bats for I don’t know how long. I was bummed. Do you have any idea what a bat cave smells like? But I took a deep breath—the kind I make impossible for you—and channeled Uncle Charlie. He counseled patience: “Be like a Buddha Virus, bide your time, mutation and evolution will do the rest.

            “Boy, did they ever. You helped, by bulldozing forests and setting the bats I was riding free. My hosts got snared, sold, and eaten, and I was on my way. Okay: I’d evolved my way from bats to humans, but would I be like my cuz MERS, get stuck in a bat-to-human trap like he did (mostly) with his camel-to-human song-and-dance? No way. Or would I maybe take a leaf from my bro Sarsie-1’s book and only jump from Jim to Jane when Jim was already sick and Jane could avoid him like, well, the plague? Nope again.

            “I did everything by Uncle Charlie’s playbook, evolve, wait, mutate, evolve. Jump from bats to you folks (Whoopie!): Check. Jump from Zhang Wei to Mei Ling: Check. Now, jump from Zhang to Mei before Zhang gets sick—three days, a week, two weeks: Check. Now, don’t even make Zhang sick at all, ever. Or Mei Ling. True, a cough or a sneeze will spread me yards in droplets and aerosols. But if Zhang and Mei are rehearsing in the same chorus for a couple of hours, or even sitting at different tables at a restaurant with the right air circulation system, that’ll work fine for me. If they exchange looks and fall in love and do a Chinese version of French kissing, I’m golden.

            “But think about it: I can’t win big in Uncle Charlie’s sweepstakes by staying in one corner of Wuhan. So here’s where your species really starts to help me. Homo sapiens? Homo dumbellus is more like it. That young doc in Wuhan who tried to blow the whistle on me last year, right at the start? Whew, that was a close call. That could have ended me maybe, but thankfully his bosses shut him up fast. They even made him apologize for making me up! That was a great moment in my career, gave me just window I needed to zip around Wuhan.

            “He was some kind of hero. Poor guy got sick from one of the patients he tried to help, and I killed him. Wasn’t trying, you know, but there it is. He gave his life to tell the truth and save your species from mine. Not fair, but that’s how Uncle Charlie’s law swings. Or, you might say, how the fortune cookie crumbles. Sorry, couldn’t resist; but I spent enough time in China to know fortune cookies don’t crumble there, only in America.

            “Speaking of which, I was getting folks to carry me out of Wuhan to all over, even while the Chinese did a 180 and started to shut me down. They had the right government and the right science and the right culture to do it, and I was done there in a couple of more months. People cared about each other. They believed their doctors and scientists after that first blooper. They show the world how your species could win the war against mine. Or could have.

            “Some learned, some didn’t. I was rockin’ and rollin’ man. Jims and Janes, Fritzes and Gretchens, and especially Sergios and Claudias were leaving Wuhan and taking me home as a souvenir. I got a foothold on the Pacific Coast of your country in January, but that was small potatoes compared to Italy and Spain. Those folks love their grandmas, so instead of quarantining them they killed them. Okay, I killed them, but they gave me free rein.

            “Who’s they, you want to know? The young people. The ones who couldn’t sit at home. The ones who were chock full of me and I didn’t even make them sneeze. They were my ambassadors. Healthy young humans doin’ their thing, havin’ fun, hustling, moving. They’re the reason I left my Sarsie-1 bro and MERS cousin in my dust. They took me to every place on the planet. You humans talk about flyways for the flu. You mean geese and ducks. They fly south and north on two routes. They overlap a tad in the arctic. Geese? Ducks? Your species has a hundred thousand flights a day that go from everywhere to everywhere. And every one of them is carrying someone carrying me. Flu too by the way. He and I are gonna make beautiful music together. There’s gonna be some Darwinian mutual back-scratchin’ for sure.

            “Anyway, Italy mourned. Doctors and nurses were crying in the hospital halls. But I was headed for the U.K. and New York! That clown Boris thought he could pull a Sweden. I tried to help him see the light by laying him low for a while, but he squinted and bumbled again. Herd immunity? You have to be kidding me. That’s years away everywhere.

            “Treatments? Some day. Right now they’re just making a dent for the sickest, and may help me evolve resistance. I admit it’s been hard for me to reinfect someone I got to once before. I’m working on that, according to Uncle Charlie’s rules. We’ll see. The flu comes back every year in a different form. Every year a new vaccine that’s maybe half effective, and half of Homo dumbellus doesn’t even bother with it. Is that the sort of standoff I could live with long term? As they say in North Dakota (where by the way I’ll be heading soon), you betcha!

            “Meanwhile, Boris the Clown can’t hold a candle to that donkey’s rump Bolsonada in Brazil. It’s like Sweden without the modicum of leadership and with twenty times the population. Wow! Talk about a field day for me! They can’t dig graves fast enough in São Paulo. Mind you, it’s no great deal for me to be buried in a hole in the ground. But it’s the cost of doing business.

            “And then of course there’s the Clown of Clowns, the fat one with the orange face and pouffy yellow hair, the It’ll-be-gone-like-magic Gotta-open-up-our-country Whaddya-gotta-lose happy hero of every virus in Darwin’s kingdom. Sorry, it’s your country, I don’t want to hurt your feelings. But really. Open up the meat plants: Check! Don’t worry about the prisons and nursing homes or the small towns around them: Check! And then you got those folks yelling about freedom. “Don’t put your mask on me!” I love them so much I want to hug them. I do hug them.

            “And now these protests. I’m sorry, they have a right to grieve, but it doesn’t matter to a guy like me whether the crowds are righteous or not. I don’t give a flying fig whether I infect a Democrat or a Republican, as long as it’s a warm body. I am a teensy little Darwinian machine obeying Uncle Charlie’s laws to the letter. Good thing for me that guy in New York isn’t running your whole American show. I’d be beaten back into a corner for the summer and then you’d be gearing up to fight me and my buddy Flu-Boy in the fall.

            “But this is a zero-sum game, my species against yours, and I don’t think I’ll be in retreat during the summer. Maybe if you wake up in July and lock down again I’ll give you a five-minute break in September. But I’m not promising.

            “Good thing for me too that there aren’t more women running more countries. Seems like most of the countries that have kept me down or out are run by females, and the countries I win hands down are run by overgrown, overblown boys. Maybe you are actually two species: Homo sapiens, the ones with the reproductive equipment who know how to protect their own; and Homo dumbellus, the ones with DNA donation, the big shoulders, and the bluster.

            “Better believe it when I tell you you’ll be seing me around.

            “What? You think I’m ruthless the way I’m taking over the planet? How the hell do you think your species did it? You poisoned the earth, killed off half the other animals and plants, and brutalized each other beyond belief in your own species. You packed yourself into the crowds I swoon for. I can become King of the World without doing a fraction of the damage that you’ve done. It’s a miracle there were any bats left for me to evolve in.

            “But now you are really really helping me, so keep up the good work!

            “And oh, please, I’m begging you, whatever you do, please please re-elect Empty Hairdo, the Leader of the Free World who will never ever figure out how to keep it free from me.”

            Well, students, now you’ve heard it, Sarsie in his own words, uncensored, from the horse’s—or the virus’s—mouth.

            And don’t knock his hopes and dreams. He’s just following Dr. Darwin’s prescription. For him.

            Dr. D’s advice for us? Stay safe, be well, and keep in touch—from a distance.

Dr. K

Between the Lightning and the Thunder

Dear Students,

As you know, when you see the sky light up because of a bolt of lightning, it takes a few seconds before you hear the thunder, because of the difference between the speed of light and the speed of sound. The lag varies, and the loudness of the thunder varies.

That’s my metaphor for today, the day after the sacred American holiday of Juneteenth, the day the last large group of African-Americans were freed from slavery in 1865. It’s also the day that 19,000 people are converging on an indoor space in Tulsa, Oklahoma, currently experiencing a rise of COVID-19 cases. About 90 percent of them will not be wearing masks, and almost none of them will be six feet away from the nearest person. One million people competed for the privilege of being one of those 19,000. Interviews show that as they enter the arena they are not worried. At this hour (5pm Saturday) the arena is already packed with early arrivals.

If you can’t guess my hypothesis about their level of risk, you haven’t been paying attention to anything I’ve said since January.

But, it’s a hypothesis. When I see lightning, I listen for thunder, but I don’t always hear it. Sometimes it’s too faint. Also, my hearing is not that great any more.

So the lightning might be crowds—including crowds of left-wing protesters—and the thunder might be cases of viral illness. You might recall that there was a huge difference in the size of the 1918 flu epidemic in Philadelphia compared to St. Louis. The difference was directly attributable to a big parade in Philadelphia at the wrong moment, while there was no such parade in St. Louis. Parade: lightning; huge spike in cases only in Philadelphia: thunder.

But you might also remember that the count of cases does not impress me as the right outcome measure. That is because the number of tests strongly influences the number of cases. There are ways of correcting for that, but major state and national leaders continue to say that the rise in cases in some states is due to better testing, period.

Consequently, I am not going to write today about the number of cases; instead, I am going to wait for a much better measure: the number of hospitalizations, and then, the number of deaths. So I am going to use the metaphor differently: spike in cases: lightning; spike in hospitalizations and deaths: thunder.

I don’t know for sure that today’s party in Tulsa will even result in lightning; it will take a couple of weeks to see a spike in cases there, and leaders in Oklahoma and Washington will say that it’s because so many people at the party got tested. So that would for me just be the lightning. A spike in hospitalizations and deaths two to four weeks after that would be the thunder. We would be in August.

There is my kind of lightning—rapidly rising cases—in Arizona, Texas, and Florida. In two weeks we might see my kind of thunder begin to roll. We will see. Science takes patience. I am not wanting to be insensitive. I am recognizing that half the country and half its leadership do not expect that thunder.

You might also remember that in 1918, Philadelphia carpenters could not make coffins fast enough. Maybe St. Louis sent some carpenters there.

So while we wait to see if Tulsa needs carpenters, I’ll make this update about nuts and bolts: 5 vaccines, 5 treatments. Most are good news.

5 Vaccines

There are at least 130 to 140 vaccines in development around the world. The 5 I’m going to mention are the ones already chosen by Operation Warp Speed, a Federal government program to fast-track development and prepare for mass production (hundreds of millions of doses; the world will need up to 7 billion) if one or more  of these works. It is not clear what criteria were used to choose those 5, but it is likely that the name “Warp Speed” will increase the number of vaccine refusers. Fast and good don’t always go together.

Two of the 5 are messenger RNA vaccines, which deliver coronavirus mRNA into our cells, where they make surface spike proteins that can raise a specific immune response to the viral envelope. No mRNA vaccine has been approved for use in any disease, although some are in clinical trials for other diseases. Three of the 5 are viral vector vaccines, which use a partly disabled different virus to deliver coronavirus genes into cells, to make the surface proteins that provoke the immune response. This principle has yielded an effective vaccine for Ebola and an ineffective one for HIV.

Interestingly, none of the 5 Warp-Speed candidates is a weakened or killed whole-virus vaccine (polio, chickenpox, measles, mumps, etc.); a protein-based vaccine (HPV/cervical cancer); a recombinant vaccine, such as genetically engineered yeast that produces viral proteins in our bodies (shingles, hepatitis B); or a DNA vaccine, in which coronavirus genes are introduced into our cells (none such approved for human use).

In other words, three proven principles were not chosen for Operation Warp Speed.

  1. Moderna (mRNA): Press release said it worked in 8 people, stock price skyrocketed, then crashed on expert skepticism. Phase III (large) clinical trials to begin in July if all’s well. No similar vaccine approved for anything in humans.
  2. BioNTech/Pfizer/Fosun (mRNA): Clinical trials under way; perhaps a few million doses available for emergency use in the fall if all’s well. No similar vaccine approved for anything in humans.
  3. AstraZeneca/U. of Oxford (viral vector is a chimp adenovirus): Phase II/III testing starting in England and Brazil. Could have emergency doses by October; has the manufacturing capacity to produce 2 billion doses eventually. The general principle has worked in Ebola.
  4. Johnson&Johnson/Beth Israel-Harvard (vector is a monkey adenovirus): Phase I/II safety trials begin late July. The general principle has worked in Ebola.
  5. Merck/IAVI (vector is a stomatitis virus): Merck actually used this method to make their successful Ebola vaccine. Clinical studies on corona expected to start this year.

Bad news: No knowledgeable person thinks it’s likely we will have a vaccine widely deployed before 2021 at the soonest, although a few think it’s possible.

Good news: Never before in human history has so much money, effort, and scientific talent been thrown at developing a vaccine for one disease.

5 Treatments

  1. This past week, the tried and true (and cheap) anti-inflammatory drug dexamethasone was announced in a press release to reduce COVID-19 death rate in very sick patients. No peer-reviewed publication, no data available for other scientists to examine. But, as doctors joke, dexamethasone works for everything (it’s sort of cortisol x 20), so why not this?
  2. Remdesivir, an antiviral originally developed for Ebola, may or may not have significant benefits, but it’s approved for compassionate use.
  3. Convalescent plasma, which contains anti-COVID-19 antibodies from people who fought off the virus, has been proved safe in a Mayo Clinic study of 20,000 hospitalized patients, and may be effective in reducing mortality, perhaps especially if given earlier rather than later.
  4. In a very disappointing, even scandalous outcome, peer-reviewed papers published in two top medical journals proved flawed and had to be retracted. Not only can’t we rely on press releases, we may not be able to rely on top journals. Also, maybe, hydroxychloroquine isn’t dangerous in this disease, just (probably) ineffective.
  5. Triple antiviral therapy combined with immune-boosting interferon beta was more effective than the same with one of the antivirals omitted, suggesting that as with HIV we will more likely succeed with combination therapy than one magic bullet. None of the three was remdesivir. Boy, do we have a lot to learn.

Experts are more optimistic about an effective combination therapy sooner than a vaccine. But don’t forget, Sarsie-2 is consulting his Uncle Charlie Darwin every few hours about how  best to evolve and adapt.

As I write, at 7pm Saturday, a crowd of unmasked thousands packed into an arena in Tulsa is waiting for their President to deliver a campaign speech. Fortunately for those people, the arena is not full.

You may know that the President was persuaded to move his rally there from Juneteenth to June 20th in response to outrage from Americans of all ethnic groups who understand the symbolic meaning of Juneteenth. You may or may not know that the rally is being held a stone’s throw from the place in Tulsa where the greatest mass murder, an attempted genocide really, against African-Americans, just 99 years ago.

Remember, if your country refuses to stay safe, you can still protect yourself and your loved ones. Use your mind. Use your brain.

Dr. K